Evidence map›Paper›PMID 35301220›Full record

ArticleGenes & development2022

A distinct core regulatory module enforces oncogene expression in KMT2A-rearranged leukemia.

Taku Harada, Yaser Heshmati, Jérémie Kalfon, Monika W Perez, Juliana Xavier Ferrucio, Jazmin Ewers, Benjamin Hubbell Engler, Andrew Kossenkov, Jana M Ellegast, Joanna S Yi and 19 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

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  8. Lineage-Selective Dependencies in Pediatric Cancers.Cold Spring Harbor perspectives in medicine · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 8 institutions in 1 country.

Taku Harada *Cancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Yaser Heshmati *Cancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Jérémie Kalfon *Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts 02142, USA.
Monika W PerezCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Juliana Xavier FerrucioCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Jazmin EwersCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Benjamin Hubbell EnglerCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Andrew KossenkovThe Wistar Institute, Philadelphia, Pennsylvania 19104, USA.
Jana M EllegastCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Joanna S YiBaylor College of Medicine, Houston, Texas 77030, USA.
Allyson BowkerCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Qian ZhuCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Kenneth EagleCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Tianxin LiuCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Yan KaiCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Joshua M DempsterBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts 02142, USA.
Guillaume KugenerBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts 02142, USA.
Jayamanna WickramasingheThe Wistar Institute, Philadelphia, Pennsylvania 19104, USA.
Zachary T HerbertDana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02215, USA.
Charles H LiWhitehead Institute for Biomedical Research, Cambridge, Massachusetts 02142, USA.
Jošt Vrabič KorenBaylor College of Medicine, Houston, Texas 77030, USA.
David M WeinstockDana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02215, USA.ORCID 0000-0002-8724-3907
Vikram R ParalkarDivision of Hematology/Oncology, Department of Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.ORCID 0000-0001-6413-951X
Behnam NabetHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Charles Y LinBaylor College of Medicine, Houston, Texas 77030, USA.
Neekesh V DhariaCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.ORCID 0000-0001-5048-067X
Kimberly StegmaierCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Stuart H OrkinCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Maxim PimkinCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts 02215, USA.
Boston Children's Hospital · USBroad Institute · USBaylor College of Medicine · USHarvard University · USThe Wistar Institute · USFred Hutch Cancer Center · USUniversity of Pennsylvania · USWhitehead Institute for Biomedical Research · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Aaron Robert Goldman · 1985 to 2026
$75.9M
Targeting SYK Kinase in AMLP50CA206963 · NCI · DANA-FARBER CANCER INST · PI GRAUBERT, TIMOTHY A · 2017 to 2021
$10.6M
Integrating Transforming Approaches to Identify and Target New Vulnerabilities in CancerR35CA210030 · NCI · DANA-FARBER CANCER INST · PI STEGMAIER, KIMBERLY · 2016 to 2022
$7.3M
The Role of PHF6 in HSC self-renewal and myeloid expansionR01HL155144 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI PARALKAR, VIKRAM R. · 2021 to 2024
$2.2M
Integrative Approach to Comprehensive Analysis of High Throughput Data on a Cancer Center LevelR50CA211199 · NCI · WISTAR INSTITUTE · PI Andrew V Kossenkov · 2016 to 2026
$1.6M
NCI NIH HHS P30 CA010815NCI NIH HHS P50 CA206963NCI NIH HHS R35 CA210030NCI NIH HHS R50 CA211199NHLBI NIH HHS R01 HL155144
6 · The paper itself

Abstract

Acute myeloid leukemia with KMT2A (MLL) rearrangements is characterized by specific patterns of gene expression and enhancer architecture, implying unique core transcriptional regulatory circuitry. Here, we identified the transcription factors MEF2D and IRF8 as selective transcriptional dependencies of KMT2A-rearranged AML, where MEF2D displays partially redundant functions with its paralog, MEF2C. Rapid transcription factor degradation followed by measurements of genome-wide transcription rates and superresolution microscopy revealed that MEF2D and IRF8 form a distinct core regulatory module with a narrow direct transcriptional program that includes activation of the key oncogenes MYC, HOXA9, and BCL2. Our study illustrates a mechanism of context-specific transcriptional addiction whereby a specific AML subclass depends on a highly specialized core regulatory module to directly enforce expression of common leukemia oncogenes.

Indexed as

Leukemia, Myeloid, AcuteMyeloid-Lymphoid Leukemia ProteinGene RearrangementHumansInterferon Regulatory FactorsOncogenesInterferon Regulatory FactorsMyeloid-Lymphoid Leukemia ProteinIRF8KMT2A-rearranged AMLMEF2Dtranscriptional addiction

Identifiers

PMID35301220
PMCPMC8973843
OpenAlexW4220938601

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.