Evidence map›Paper›PMID 35300306›Full record

ArticleADMET & DMPK2020

Solubility prediction in the bRo5 chemical space: where are we right now?

Giuseppe Ermondi, Vasanthanathan Poongavanam, Maura Vallaro, Jan Kihlberg, Giulia Caron

Abstract read
In one paragraph

Article in ADMET & DMPK, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Giuseppe ErmondiDepartment of Molecular Biotechnology and Health Sciences, University of Torino, Quarello 15, 10135, Torino, Italy.
Vasanthanathan PoongavanamDepartment of Chemistry - BMC, Uppsala University, SE-75123, Uppsala, Sweden.
Maura VallaroDepartment of Molecular Biotechnology and Health Sciences, University of Torino, Quarello 15, 10135, Torino, Italy.
Jan KihlbergDepartment of Chemistry - BMC, Uppsala University, SE-75123, Uppsala, Sweden.
Giulia CaronDepartment of Molecular Biotechnology and Health Sciences, University of Torino, Quarello 15, 10135, Torino, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modelling the solubility of compounds in the "beyond Rule of 5" (bRo5) chemical space is in its infancy and to date only a few studies have been reported in the literature. Based on our own results, and those already published, we conclude that consideration of conformational flexibility and chameleon like behaviour is important, but quantitative models that account for these properties remain to be developed. Inclusion of 3D information appears to be somewhat less important than for cell permeability and extremely challenging due to the difficulties of accurate conformational sampling in the bRo5 space. Currently, methods for modelling of solubility will have to be tailored to the set of investigated compounds.

Indexed as

Chameleonicityflexibilityionizationlipophilicitypolarity

Identifiers

PMID35300306
PMCPMC8915608

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.