Evidence map›Paper›PMID 35298818›Full record

ReviewMethods in molecular biology (Clifton, N.J.)2022

Structural Prediction of Peptide-MHC Binding Modes.

Marta A S Perez, Michel A Cuendet, Ute F Röhrig, Olivier Michielin, Vincent Zoete

Abstract readReview
PubMed Publisher
In one paragraph

Review in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. RankMHC: Learning to Rank Class-I Peptide-MHC Structural Models.Journal of chemical information and modeling · 2024
    Article
  8. Review
  9. Article
  10. Review
  11. Peptide-binding specificity prediction using fine-tuned protein structure prediction networks.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Marta A S Perez *Computer-aided Molecular Engineering Group, Department of Oncology UNIL-CHUV, Lausanne University, Lausanne, Switzerland.
Michel A Cuendet *Molecular Modelling Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Ute F RöhrigMolecular Modelling Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Olivier MichielinMolecular Modelling Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland. olivier.michielin@chuv.ch.
Vincent ZoeteComputer-aided Molecular Engineering Group, Department of Oncology UNIL-CHUV, Lausanne University, Lausanne, Switzerland. vincent.zoete@unil.ch.
SIB Swiss Institute of Bioinformatics · CHLudwig Cancer Research · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The immune system is constantly protecting its host from the invasion of pathogens and the development of cancer cells. The specific CD8

Indexed as

Histocompatibility Antigens Class IMajor Histocompatibility ComplexPeptidesDatabases, ProteinHumansProtein BindingReceptors, Antigen, T-CellHistocompatibility Antigens Class IPeptidesReceptors, Antigen, T-CellDatabasesDocking algorithmsImmune systemLigand bindingMajor histocompatibility complexMolecular mechanicsPeptide antigenPeptide dockingT-cell receptor

Identifiers

PMID35298818
OpenAlexW4220798728

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.