Evidence map›Paper›PMID 35298544›Full record

ArticlePloS one2022

Performance characteristics of the first Food and Drug Administration (FDA)-cleared digital droplet PCR (ddPCR) assay for BCR::ABL1 monitoring in chronic myelogenous leukemia.

Dawne N Shelton, Prasanthi Bhagavatula, Nathan Sepulveda, Lan Beppu, Shital Gandhi, Dahui Qin, Scott Hauenstein, Jerald Radich

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Droplet Digital PCR for Oncogenic KMT2A Fusion Detection.The Journal of molecular diagnostics : JMD · 2023
    Article
  10. MolecularInternational journal of molecular sciences · 2023
    Article
  11. Article
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Dawne N SheltonDigital Biology Group, Bio-Rad Laboratories, Pleasanton, California, United States of America.
Prasanthi BhagavatulaDigital Biology Group, Bio-Rad Laboratories, Pleasanton, California, United States of America.ORCID 0000-0002-4442-7220
Nathan SepulvedaDigital Biology Group, Bio-Rad Laboratories, Pleasanton, California, United States of America.
Lan BeppuClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Shital GandhiDepartment of Pathology, Moffitt Cancer Center, Tampa, Florida, United States of America.
Dahui QinDepartment of Pathology, Moffitt Cancer Center, Tampa, Florida, United States of America.
Scott HauensteinDigital Biology Group, Bio-Rad Laboratories, Pleasanton, California, United States of America.
Jerald RadichClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Bio-Rad (United States) · USFred Hutch Cancer Center · USMoffitt Cancer Center · US

Funding

Stopping Tyrosine Kinase Inhibitors in CML Patients (Stop-TKIs)R01CA184798 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI ATALLAH, EHAB L, FLYNN, KATHRYN E · 2014 to 2019
$3.3M
NCI NIH HHS R01 CA184798
6 · The paper itself

Abstract

Chronic myelogenous leukemia (CML) is a hematopoietic stem cell malignancy that accounts for 15-20% of all cases of leukemia. CML is caused by a translocation between chromosomes 9 and 22 which creates an abnormal fusion gene, BCR::ABL1. The amount of BCR::ABL1 transcript RNA is a marker of disease progression and the effectiveness of tyrosine kinase inhibitor (TKI) treatment. This study determined the analytical and clinical performance of a droplet digital PCR based assay (QXDx BCR-ABL %IS Kit; Bio-Rad) for BCR::ABL1 quantification. The test has a limit of detection of MR4.7 (0.002%) and a linear range of MR0.3-4.7 (50-0.002%IS). Reproducibility of results across multiple sites, days, instruments, and users was evaluated using panels made from BCR::ABL1 positive patient samples. Clinical performance of the assay was evaluated on patient samples and compared to an existing FDA-cleared test. The reproducibility study noted negligible contributions to variance from site, instrument, day, and user for samples spanning from MR 0.7-4.2. The assay demonstrated excellent clinical correlation with the comparator test using a Deming regression with a Pearson R of 0.99, slope of 1.037 and intercept of 0.1084. This data establishes that the QXDx™ BCR-ABL %IS Kit is an accurate, precise, and sensitive system for the diagnosis and monitoring of CML.

Indexed as

Fusion Proteins, bcr-ablLeukemia, Myelogenous, Chronic, BCR-ABL PositiveHumansPolymerase Chain ReactionProtein Kinase InhibitorsReproducibility of ResultsUnited StatesUnited States Food and Drug AdministrationFusion Proteins, bcr-ablProtein Kinase Inhibitors

Identifiers

PMID35298544
PMCPMC8929598
OpenAlexW4221120707

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.