Evidence map›Paper›PMID 35298339›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Recombination resolves the cost of horizontal gene transfer in experimental populations of

An N T Nguyen, Laura C Woods, Rebecca Gorrell, Shamitraa Ramanan, Terry Kwok, Michael J McDonald

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. International journal of molecular sciences · 2025
    Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. The evolutionary genomics of adaptation to stress in wild rhizobium bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Article
  17. Pangenome Analysis ofInternational journal of genomics · 2024
    Article
  18. Experimental evolution for cell biology.Trends in cell biology · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

An N T NguyenSchool of Biological Sciences, Monash University, Clayton, VIC 300, Australia.ORCID 0000-0003-4893-6636
Laura C WoodsSchool of Biological Sciences, Monash University, Clayton, VIC 300, Australia.ORCID 0000-0003-4525-4760
Rebecca GorrellDepartment of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 300, Australia.ORCID 0000-0003-0728-3325
Shamitraa RamananSchool of Biological Sciences, Monash University, Clayton, VIC 300, Australia.
Terry KwokDepartment of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 300, Australia.ORCID 0000-0002-5905-3233
Michael J McDonaldSchool of Biological Sciences, Monash University, Clayton, VIC 300, Australia.ORCID 0000-0002-5735-960X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Horizontal gene transfer (HGT) is important for microbial evolution, yet we know little about the fitness effects and dynamics of horizontally transferred genetic variants. In this study, we evolve laboratory populations of Helicobacter pylori, which take up DNA from their environment by natural transformation, and measure the fitness effects of thousands of transferred genetic variants. We find that natural transformation increases the rate of adaptation but comes at the cost of significant genetic load. We show that this cost is circumvented by recombination, which increases the efficiency of selection by decoupling deleterious and beneficial genetic variants. Our results show that adaptation with HGT, pervasive in natural microbial populations, is shaped by a combination of selection, recombination, and genetic drift not accounted for in existing models of evolution.

Indexed as

Gene Transfer, HorizontalHelicobacter pyloriantibiotic resistanceevolutionexperimental evolutionhorizontal gene transferH. pylori

Identifiers

PMID35298339
PMCPMC8944584

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.