Evidence map›Paper›PMID 35296726›Full record

ArticleScientific reports2022

Generalized ComBat harmonization methods for radiomic features with multi-modal distributions and multiple batch effects.

Hannah Horng, Apurva Singh, Bardia Yousefi, Eric A Cohen, Babak Haghighi, Sharyn Katz, Peter B Noël, Russell T Shinohara, Despina Kontos

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  14. Radiomics and Back Pain.Global spine journal · 2026
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hannah HorngDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Apurva SinghDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA.
Bardia YousefiDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA.
Eric A CohenDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA.
Babak HaghighiDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA.
Sharyn KatzDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA.
Peter B NoëlLaboratory for Advanced Computed Tomography Imaging, Department of Radiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Russell T ShinoharaPenn Statistics in Imaging and Visualization Endeavor (PennSIVE), Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, 19104, USA. Russell.Shinohara@pennmedicine.upenn.edu.
Despina KontosDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA. Despina.Kontos@pennmedicine.upenn.edu.

Funding

Harmonization of Multi-Site Neuroimaging Data from Complex Study DesignsR01MH123550 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI SHINOHARA, RUSSELL TAKESHI · 2020 to 2025
$4.0M
Training Program in Biomedical Imaging and Information SciencesT32EB009384 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI GEE, JAMES C, IVES, ZACHARY · 2009 to 2023
$4.0M
Effect of Breast Density on Screening Recall with Digital Breast TomosynthesisR01CA161749 · NCI · UNIVERSITY OF PENNSYLVANIA · PI KONTOS, DESPINA · 2012 to 2021
$3.6M
Radiogenomic Biomarkers of Breast Cancer RecurrenceR01CA223816 · NCI · UNIVERSITY OF PENNSYLVANIA · PI CHODOSH, LEWIS A, KONTOS, DESPINA · 2018 to 2022
$3.1M
Predictive and Diagnostic Radiomic Signatures in Non-Small Cell Lung Cancer (NSCLC)on ImmunotherapyR01CA264835 · NCI · UNIVERSITY OF PENNSYLVANIA · PI KATZ, SHARYN, KONTOS, DESPINA · 2021 to 2025
$2.8M
Multi-parametric 4-D Imaging Biomarkers for Neoadjuvant Treatment ResponseR01CA197000 · NCI · UNIVERSITY OF PENNSYLVANIA · PI KONTOS, DESPINA · 2016 to 2020
$2.4M
NCI NIH HHS R01 CA161749NCI NIH HHS R01 CA197000NCI NIH HHS R01 CA223816NCI NIH HHS R01 CA264835NIBIB NIH HHS T32 EB009384NIH HHS R01MH123550NIMH NIH HHS R01 MH123550
6 · The paper itself

Abstract

Radiomic features have a wide range of clinical applications, but variability due to image acquisition factors can affect their performance. The harmonization tool ComBat is a promising solution but is limited by inability to harmonize multimodal distributions, unknown imaging parameters, and multiple imaging parameters. In this study, we propose two methods for addressing these limitations. We propose a sequential method that allows for harmonization of radiomic features by multiple imaging parameters (Nested ComBat). We also employ a Gaussian Mixture Model (GMM)-based method (GMM ComBat) where scans are split into groupings based on the shape of the distribution used for harmonization as a batch effect and subsequent harmonization by a known imaging parameter. These two methods were evaluated on features extracted with CapTK and PyRadiomics from two public lung computed tomography datasets. We found that Nested ComBat exhibited similar performance to standard ComBat in reducing the percentage of features with statistically significant differences in distribution attributable to imaging parameters. GMM ComBat improved harmonization performance over standard ComBat (- 11%, - 10% for Lung3/CAPTK, Lung3/PyRadiomics harmonizing by kernel resolution). Features harmonized with a variant of the Nested method and the GMM split method demonstrated similar c-statistics and Kaplan-Meier curves when used in survival analyses.

Indexed as

Tomography, X-Ray Computed

Identifiers

PMID35296726
PMCPMC8927332

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.