Evidence map›Paper›PMID 35296517›Full record

ArticleLife science alliance2022

SARS-CoV-2 spike E156G/Δ157-158 mutations contribute to increased infectivity and immune escape.

Tarun Mishra, Rishikesh Dalavi, Garima Joshi, Atul Kumar, Pankaj Pandey, Sanjeev Shukla, Ram K Mishra, Ajit Chande

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  3. Computational and structural biotechnology journal · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Tarun MishraMolecular Virology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, India.
Rishikesh DalaviMolecular Virology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, India.
Garima JoshiSumo and Nuclear Pore Biology Group, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, India.ORCID 0000-0003-0775-8861
Atul KumarStructural Biology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, India.
Pankaj PandeyCOVID-19 Testing Centre, Indian Institute of Science Education and Research, Bhopal, India.
Sanjeev ShuklaCOVID-19 Testing Centre, Indian Institute of Science Education and Research, Bhopal, India.ORCID 0000-0003-3361-0588
Ram K MishraSumo and Nuclear Pore Biology Group, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, India.
Ajit ChandeMolecular Virology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, India ajitg@iiserb.ac.in.ORCID 0000-0003-2210-5180
Indian Institute of Science Education and Research, Bhopal · IN

Funding

Wellcome Trust
6 · The paper itself

Abstract

Breakthrough infections by emerging SARS-CoV-2 variants raise significant concerns. Here, we sequence-characterized the spike gene from breakthrough infections that corresponded to B.1.617 sublineage. Delineating the functional impact of spike mutations revealed that N-terminal domain (NTD)-specific E156G/Δ157-158 contributed to increased infectivity and reduced sensitivity to vaccine-induced antibodies. A six-nucleotide deletion (467-472) in the spike-coding region introduced this change in the NTD. We confirmed the presence of E156G/Δ157-158 from cases concurrently screened, in addition to other circulating spike (S1) mutations such as T19R, T95I, L452R, E484Q, and D614G. Notably, E156G/Δ157-158 was present in more than 90% of the sequences reported from the USA and UK in October 2021. The spike-pseudotyped viruses bearing a combination of E156G/Δ157-158 and L452R exhibited higher infectivity and reduced sensitivity to neutralization. Notwithstanding, the post-recovery plasma robustly neutralized viral particles bearing the mutant spike. When the spike harbored E156G/Δ157-158 along with L452R and E484Q, increased cell-to-cell fusion was also observed, suggesting a combinatorial effect of these mutations. Our study underscores the importance of non-RBD changes in determining infectivity and immune escape.

Indexed as

COVID-19Spike Glycoprotein, CoronavirusHumansMutationSARS-CoV-2Spike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID35296517
PMCPMC8927725
OpenAlexW4220739320

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.