Evidence map›Paper›PMID 35295943›Full record

ArticleFrontiers in genetics2022

SSAM-lite: A Light-Weight Web App for Rapid Analysis of Spatially Resolved Transcriptomics Data.

Sebastian Tiesmeyer, Shashwat Sahay, Niklas Müller-Bötticher, Roland Eils, Sebastian D Mackowiak, Naveed Ishaque

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sebastian TiesmeyerDigital Health Center, Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany.
Shashwat SahayDigital Health Center, Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany.
Niklas Müller-BötticherDigital Health Center, Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany.
Roland EilsDigital Health Center, Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany.
Sebastian D MackowiakDigital Health Center, Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany.
Naveed IshaqueDigital Health Center, Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Berlin, Germany.
Berlin Institute of Health at Charité - Universitätsmedizin Berlin · DEUniversity Hospital Heidelberg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The combination of a cell's transcriptional profile and location defines its function in a spatial context. Spatially resolved transcriptomics (SRT) has emerged as the assay of choice for characterizing cells

Indexed as

cell typingin situ hybridizationin situ sequencingspatially resolved transcriptomicsspatial transcriptomicsweb application

Identifiers

PMID35295943
PMCPMC8918671
OpenAlexW4225339264

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.