Evidence map›Paper›PMID 35295214›Full record

ArticleFrontiers in toxicology2022

From Causal Networks to Adverse Outcome Pathways: A Developmental Neurotoxicity Case Study.

Živa Ramšak, Vid Modic, Roman A Li, Colette Vom Berg, Anze Zupanic

Abstract read
In one paragraph

Article in Frontiers in toxicology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Živa RamšakDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Vid ModicDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Roman A LiDepartment of Environmental Toxicology, Eawag-Swiss Federal Institute of Aquatic Science and Technology, Duebendorf, Switzerland.
Colette Vom BergDepartment of Environmental Toxicology, Eawag-Swiss Federal Institute of Aquatic Science and Technology, Duebendorf, Switzerland.
Anze ZupanicDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The last decade has seen the adverse outcome pathways (AOP) framework become one of the most powerful tools in chemical risk assessment, but the development of new AOPs remains a slow and manually intensive process. Here, we present a faster approach for AOP generation, based on manually curated causal toxicological networks. As a case study, we took a recently published zebrafish developmental neurotoxicity network, which contains causally connected molecular events leading to neuropathologies, and developed two new adverse outcome pathways: Inhibition of Fyna (Src family tyrosine kinase A) leading to increased mortality via decreased eye size (AOP 399 on AOP-Wiki) and GSK3beta (Glycogen synthase kinase 3 beta) inactivation leading to increased mortality via defects in developing inner ear (AOP 410). The approach consists of an automatic separation of the toxicological network into candidate AOPs, filtering the AOPs according to available evidence and length as well as manual development of new AOPs and weight-of-evidence evaluation. The semiautomatic approach described here provides a new opportunity for fast and straightforward AOP development based on large network resources.

Indexed as

adverse outcome pathwaycausal networkneurotoxicitysystems toxicologytoxicological network

Identifiers

PMID35295214
PMCPMC8915909

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.