Evidence map›Paper›PMID 35294876›Full record

ArticleCell reports2022

The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes.

Görkem Garipler, Congyi Lu, Alexis Morrissey, Lorena S Lopez-Zepeda, Yingzhen Pei, Simon E Vidal, Ana Paula Zen Petisco Fiore, Begüm Aydin, Matthias Stadtfeld, Uwe Ohler and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Görkem GariplerDepartment of Biology, New York University, New York, NY 10003, USA.
Congyi LuDepartment of Biology, New York University, New York, NY 10003, USA; New York Genome Center, New York, NY 10013, USA.
Alexis MorrisseyCenter for Eukaryotic Gene Regulation, The Pennsylvania State University, University Park, PA 16802, USA.
Lorena S Lopez-ZepedaDepartment of Biology, Humboldt Universität zu Berlin, Berlin 10117, Germany; Berlin Institute for Medical Systems Biology, Max-Delbrück-Center for Molecular Medicine, Berlin 13125, Germany.
Yingzhen PeiDepartment of Biology, New York University, New York, NY 10003, USA.
Simon E VidalSanford I Weill Department of Medicine, Division of Regenerative Medicine, Weill Cornell Medicine, New York, NY 10021, USA.
Ana Paula Zen Petisco FioreDepartment of Biology, New York University, New York, NY 10003, USA.
Begüm AydinDepartment of Biology, New York University, New York, NY 10003, USA.
Matthias StadtfeldSanford I Weill Department of Medicine, Division of Regenerative Medicine, Weill Cornell Medicine, New York, NY 10021, USA.
Uwe OhlerDepartment of Biology, Humboldt Universität zu Berlin, Berlin 10117, Germany; Berlin Institute for Medical Systems Biology, Max-Delbrück-Center for Molecular Medicine, Berlin 13125, Germany.
Shaun MahonyCenter for Eukaryotic Gene Regulation, The Pennsylvania State University, University Park, PA 16802, USA.
Neville E SanjanaDepartment of Biology, New York University, New York, NY 10003, USA; New York Genome Center, New York, NY 10013, USA. Electronic address: neville@sanjanalab.org.
Esteban O MazzoniDepartment of Biology, New York University, New York, NY 10003, USA. Electronic address: eom204@nyu.edu.
New York University · USCornell University · USMax Delbrück Center · DENew York Genome Center · USPennsylvania State University · US

Funding

REGULATION OF TBP DIMERSR01GM059055 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI PUGH, B FRANKLIN · 2000 to 2020
$6.6M
Predicting the functional impact of non-coding mutations using patient-specific gene regulatory networksR01CA218668 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI EKTA KHURANA, Neville Sanjana · 2018 to 2026
$4.7M
In situ functional genomics to understand transcriptional regulationDP2HG010099 · NHGRI · NEW YORK GENOME CENTER · PI SANJANA, NEVILLE · 2017 to 2022
$4.4M
Understanding CTCF Boundaries Controlling Hox Gene ExpressionR01NS100897 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Esteban Orlando Mazzoni, DANNY REINBERG · 2018 to 2026
$4.1M
Computation, Bioinformatics, and Statistics (CBIOS) Training ProgramT32GM102057 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI CHIAROMONTE, FRANCESCA, GIRIRAJAN, SANTHOSH · 2013 to 2022
$2.7M
Molecular mechanisms of direct neuronal programmingR01HD079682 · NICHD · NEW YORK UNIVERSITY · PI MAZZONI, ESTEBAN ORLANDO · 2014 to 2018
$1.5M
Genome-wide structural organization of proteins within human gene regulatory complexesR01GM125722 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI MAHONY, SHAUN AENGUS, PUGH, B FRANKLIN · 2018 to 2021
$1.5M
Genome engineering tools for functional screening of non-coding elementsR00HG008171 · NHGRI · NEW YORK GENOME CENTER · PI SANJANA, NEVILLE · 2016 to 2018
$733k
NCI NIH HHS R01 CA218668NHGRI NIH HHS DP2 HG010099NHGRI NIH HHS R00 HG008171NICHD NIH HHS R01 HD079682NIGMS NIH HHS R01 GM059055NIGMS NIH HHS R01 GM125722NIGMS NIH HHS T32 GM102057NINDS NIH HHS R01 NS100897
6 · The paper itself

Abstract

In pluripotent cells, a delicate activation-repression balance maintains pro-differentiation genes ready for rapid activation. The identity of transcription factors (TFs) that specifically repress pro-differentiation genes remains obscure. By targeting ∼1,700 TFs with CRISPR loss-of-function screen, we found that ZBTB11 and ZFP131 are required for embryonic stem cell (ESC) pluripotency. ESCs without ZBTB11 or ZFP131 lose colony morphology, reduce proliferation rate, and upregulate transcription of genes associated with three germ layers. ZBTB11 and ZFP131 bind proximally to pro-differentiation genes. ZBTB11 or ZFP131 loss leads to an increase in H3K4me3, negative elongation factor (NELF) complex release, and concomitant transcription at associated genes. Together, our results suggest that ZBTB11 and ZFP131 maintain pluripotency by preventing premature expression of pro-differentiation genes and present a generalizable framework to maintain cellular potency.

Indexed as

Embryonic Stem CellsPluripotent Stem CellsAnimalsCell DifferentiationCRISPR-Cas SystemsDNA-Binding ProteinsGerm LayersHumansMiceRepressor ProteinsTranscription FactorsDNA-Binding ProteinsRepressor ProteinsTranscription FactorsZBTB11 protein, humanZbtb11 protein, mouseZNF131 protein, humanZNF131 protein, mouseCRISPR screendifferentiationembryonic stem cellspluripotencypoised genestranscription factors

Identifiers

PMID35294876
PMCPMC8972945
OpenAlexW4221072882

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.