Evidence map›Paper›PMID 35293861›Full record

ArticleeLife2022

Measuring the tolerance of the genetic code to altered codon size.

Erika Alden DeBenedictis, Dieter Söll, Kevin M Esvelt

Abstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Tuning tRNAs for improved translation.Frontiers in genetics · 2024
    Review
  10. Review
  11. Virus-assisted directed evolution of biomolecules.Current opinion in chemical biology · 2023
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Erika Alden DeBenedictisDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, United States.ORCID 0000-0002-7933-2651
Dieter SöllDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, United States.ORCID 0000-0002-3077-8986
Kevin M EsveltDepartment of Media Arts and Sciences, Massachusetts Institute of Technology, Cambridge, United States.ORCID 0000-0001-8797-3945

Funding

Studies of Transfer RNAR35GM122560 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 2017 to 2022
$5.6M
Sculpting the Enteric Microbiota with CRISPR-Cas SystemsR00DK102669 · NIDDK · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ESVELT, KEVIN · 2016 to 2017
$496k
Quadruplet Decoding for Multiplexed Non-Canonical Amino Acid IncorporationF31AI145181 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI DEBENEDICTIS, ERIKA ALDEN · 2019 to 2020
$88k
NIAID NIH HHS F31 AI145181NIDDK NIH HHS R00 DK102669NIGMS NIH HHS R35 GM122560
6 · The paper itself

Abstract

Translation using four-base codons occurs in both natural and synthetic systems. What constraints contributed to the universal adoption of a triplet codon, rather than quadruplet codon, genetic code? Here, we investigate the tolerance of the

Indexed as

Amino Acyl-tRNA SynthetasesGenetic CodeAnticodonCodonEscherichia coliProtein BiosynthesisRNA, TransferAmino Acyl-tRNA SynthetasesAnticodonCodonRNA, Transferbiochemistrychemical biologydirected evolutionE. coligenetic code expansionquadruplet codontRNA

Identifiers

PMID35293861
PMCPMC9094753

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.