Evidence map›Paper›PMID 35293790›Full record

ArticlemSystems2022

Transcriptional Profiles of a Foliar Fungal Endophyte (

Justin P Shaffer, Morgan E Carter, Joseph E Spraker, Meara Clark, Brian A Smith, Kevin L Hockett, David A Baltrus, A Elizabeth Arnold

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. International journal of systematic and evolutionary microbiology · 2024
    Article
  10. Article
  11. Article
  12. Facilitating Growth of Maize (Journal of agricultural and food chemistry · 2024
    Article
  13. Incorporating omics-based tools into endophytic fungal research.Biotechnology notes (Amsterdam, Netherlands) · 2024
    Review
  14. Article
  15. Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Justin P Shaffer *School of Plant Sciences, The University of Arizonagrid.134563.6, Tucson, Arizona, USA.ORCID 0000-0002-9371-6336
Morgan E Carter *School of Plant Sciences, The University of Arizonagrid.134563.6, Tucson, Arizona, USA.ORCID 0000-0001-5639-2013
Joseph E SprakerSchool of Plant Sciences, The University of Arizonagrid.134563.6, Tucson, Arizona, USA.ORCID 0000-0002-5429-0328
Meara ClarkSchool of Plant Sciences, The University of Arizonagrid.134563.6, Tucson, Arizona, USA.
Brian A SmithSchool of Plant Sciences, The University of Arizonagrid.134563.6, Tucson, Arizona, USA.
Kevin L HockettSchool of Plant Sciences, The University of Arizonagrid.134563.6, Tucson, Arizona, USA.ORCID 0000-0002-0997-4712
David A BaltrusSchool of Plant Sciences, The University of Arizonagrid.134563.6, Tucson, Arizona, USA.ORCID 0000-0002-5166-9551
A Elizabeth ArnoldSchool of Plant Sciences, The University of Arizonagrid.134563.6, Tucson, Arizona, USA.ORCID 0000-0002-7013-4026
University of Arizona · USPennsylvania State University · US

Funding

UCSD/SDSU IRACDAK12GM068524 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TREJO, JOANN · 2003 to 2025
$24.4M
NIGMS NIH HHS K12 GM068524
6 · The paper itself

Abstract

Symbiosis with bacteria is widespread among eukaryotes, including fungi. Bacteria that live within fungal mycelia (endohyphal bacteria) occur in many plant-associated fungi, including diverse Mucoromycota and Dikarya.

Indexed as

AscomycotaFungi, UnclassifiedGammaproteobacteriaType VI Secretion SystemsXanthomonadaceaeBacteriaEndophytesMethioninePestalotiopsisPlantsSymbiosisMethionineType VI Secretion Systemsbacterial-fungal interactionsculture conditionsendobacteriagene expressioninterdomaininterkingdomPlatycladus orientalisRNA-seqsymbiosistranscriptomics

Identifiers

PMID35293790
PMCPMC9040847
OpenAlexW4220770498

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.