Evidence map›Paper›PMID 35292654›Full record

ArticleScientific reports2022

Detection of subtle white matter lesions in MRI through texture feature extraction and boundary delineation using an embedded clustering strategy.

Kokhaur Ong, David M Young, Sarina Sulaiman, Siti Mariyam Shamsuddin, Norzaini Rose Mohd Zain, Hilwati Hashim, Kahhay Yuen, Stephan J Sanders, Weimiao Yu, Seepheng Hang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  3. Automated quality control of small animal MR neuroimaging data.Imaging neuroscience (Cambridge, Mass.) · 2024
    Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 3 countries.

Kokhaur Ong *Bioinformatics Institute, A*STAR, Singapore, Singapore.
David M Young *Institute of Molecular and Cell Biology, A*STAR, Singapore, Singapore.
Sarina SulaimanSchool of Computing, Faculty of Engineering, Universiti Teknologi Malaysia, Johor, Malaysia.
Siti Mariyam ShamsuddinSchool of Computing, Faculty of Engineering, Universiti Teknologi Malaysia, Johor, Malaysia.
Norzaini Rose Mohd ZainDepartment of Radiology, Hospital Kuala Lumpur, Kuala Lumpur, Malaysia.
Hilwati HashimDepartment of Radiology, Faculty of Medicine, Universiti Teknologi MARA, Sungai Buloh, Malaysia.
Kahhay YuenSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, Penang, Malaysia.
Stephan J SandersDepartment of Psychiatry and Behavioral Sciences, UCSF Weill Institute for Neurosciences, University of California, San Francisco, USA.
Weimiao YuBioinformatics Institute, A*STAR, Singapore, Singapore. yu_weimiao@bii.a-star.edu.sg.
Seepheng HangDepartment of Mathematical Sciences, Faculty of Science, Universiti Teknologi Malaysia, UTM Skudai, 81310, Johor, Malaysia. sphang@utm.my.
University of Technology Malaysia · MYInstitute of Molecular and Cell Biology · SGBioinformatics Institute · SGHospital Kuala Lumpur · MYUniversiti Sains Malaysia · MYUniversiti Teknologi MARA · MYUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

White matter lesions (WML) underlie multiple brain disorders, and automatic WML segmentation is crucial to evaluate the natural disease course and effectiveness of clinical interventions, including drug discovery. Although recent research has achieved tremendous progress in WML segmentation, accurate detection of subtle WML present early in the disease course remains particularly challenging. Here we propose an approach to automatic WML segmentation of mild WML loads using an intensity standardisation technique, gray level co-occurrence matrix (GLCM) embedded clustering technique, and random forest (RF) classifier to extract texture features and identify morphology specific to true WML. We precisely define their boundaries through a local outlier factor (LOF) algorithm that identifies edge pixels by local density deviation relative to its neighbors. The automated approach was validated on 32 human subjects, demonstrating strong agreement and correlation (excluding one outlier) with manual delineation by a neuroradiologist through Intra-Class Correlation (ICC = 0.881, 95% CI 0.769, 0.941) and Pearson correlation (r = 0.895, p-value < 0.001), respectively, and outperforming three leading algorithms (Trimmed Mean Outlier Detection, Lesion Prediction Algorithm, and SALEM-LS) in five of the six established key metrics defined in the MICCAI Grand Challenge. By facilitating more accurate segmentation of subtle WML, this approach may enable earlier diagnosis and intervention.

Indexed as

White MatterAlgorithmsBrainCluster AnalysisHumansMagnetic Resonance Imaging

Identifiers

PMID35292654
PMCPMC8924181
OpenAlexW4220884457

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.