Evidence map›Paper›PMID 35292072›Full record

ArticlePlant methods2022

Predicting yellow rust in wheat breeding trials by proximal phenotyping and machine learning.

Alexander Koc, Firuz Odilbekov, Marwan Alamrani, Tina Henriksson, Aakash Chawade

Abstract read
In one paragraph

Article in Plant methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Genomic Loci for Sclerotinia Stem Rot Resistance and Chlorophyll Stability inPlant-environment interactions (Hoboken, N.J.) · 2025
    Article
  3. Review
  4. Co-Location of QTL for Vigor and Resistance to Three Diseases inInternational journal of molecular sciences · 2025
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexander KocDepartment of Plant Breeding, Swedish University of Agricultural Sciences, P.O. Box 190, SE-234 22, Lomma, Sweden.
Firuz OdilbekovDepartment of Plant Breeding, Swedish University of Agricultural Sciences, P.O. Box 190, SE-234 22, Lomma, Sweden.
Marwan AlamraniDepartment of Plant Breeding, Swedish University of Agricultural Sciences, P.O. Box 190, SE-234 22, Lomma, Sweden.
Tina HenrikssonLantmännen Lantbruk, SE-268 81, Svalöv, Sweden.
Aakash ChawadeDepartment of Plant Breeding, Swedish University of Agricultural Sciences, P.O. Box 190, SE-234 22, Lomma, Sweden. aakash.chawade@slu.se.ORCID http://orcid.org/0000-0002-6500-4139

Funding

Grogrund #slu.ltv.2019.1.1.1-155Nordforsk 84597Nordic Council of Ministers PPP #6P2
6 · The paper itself

Abstract

backgroundHigh-throughput plant phenotyping (HTPP) methods have the potential to speed up the crop breeding process through the development of cost-effective, rapid and scalable phenotyping methods amenable to automation. Crop disease resistance breeding stands to benefit from successful implementation of HTPP methods, as bypassing the bottleneck posed by traditional visual phenotyping of disease, enables the screening of larger and more diverse populations for novel sources of resistance. The aim of this study was to use HTPP data obtained through proximal phenotyping to predict yellow rust scores in a large winter wheat field trial.

resultsThe results show that 40-42 spectral vegetation indices (SVIs) derived from spectroradiometer data are sufficient to predict yellow rust scores using Random Forest (RF) modelling. The SVIs were selected through RF-based recursive feature elimination (RFE), and the predicted scores in the resulting models had a prediction accuracy of r

conclusionsThe proposed HTPP method of combining SVI data from spectral sensors in RF models, has the potential to be deployed in wheat breeding trials to score yellow rust.

Indexed as

Disease resistanceField phenotypingHigh-throughput phenotypingLow-cost phenotypingPlant breedingSpectral vegetation indexWinter wheatYellow rust

Identifiers

PMID35292072
PMCPMC8922805

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.