Evidence map›Paper›PMID 35289833›Full record

ArticleThe Journal of cell biology2022

Prion-like domains drive CIZ1 assembly formation at the inactive X chromosome.

Sajad Sofi, Louisa Williamson, Gabrielle L Turvey, Charlotte Scoynes, Claire Hirst, Jonathan Godwin, Neil Brockdorff, Justin Ainscough, Dawn Coverley

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  8. Review
  9. Review
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  12. CIZ1 in Xist seeded assemblies at the inactive X chromosome.Frontiers in cell and developmental biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Sajad SofiDepartment of Biology, University of York, York, UK.ORCID 0000-0001-8354-1694
Louisa WilliamsonDepartment of Biology, University of York, York, UK.
Gabrielle L TurveyDepartment of Biology, University of York, York, UK.ORCID 0000-0002-2546-1415
Charlotte ScoynesDepartment of Biology, University of York, York, UK.
Claire HirstDepartment of Biology, University of York, York, UK.ORCID 0000-0001-7832-5030
Jonathan GodwinDepartment of Biochemistry, University of Oxford, Oxford, UK.
Neil BrockdorffDepartment of Biochemistry, University of Oxford, Oxford, UK.
Justin AinscoughDepartment of Biology, University of York, York, UK.ORCID 0000-0003-0231-433X
Dawn CoverleyDepartment of Biology, University of York, York, UK.ORCID 0000-0001-8262-7023
University of York · GBUniversity of Oxford · GBEdinburgh College · GB

Funding

Medical Research Council MR/R008981Medical Research Council MR/R008981/1Medical Research Council MR/V029088/1
6 · The paper itself

Abstract

CIZ1 forms large assemblies at the inactive X chromosome (Xi) in female fibroblasts in an Xist lncRNA-dependent manner and is required for accurate maintenance of polycomb targets genome-wide. Here we address requirements for assembly formation and show that CIZ1 undergoes two direct interactions with Xist, via independent N- and C-terminal domains. Interaction with Xist, assembly at Xi, and complexity of self-assemblies formed in vitro are modulated by two alternatively spliced glutamine-rich prion-like domains (PLD1 and 2). PLD2 is dispensable for accumulation at existing CIZ1-Xi assemblies in wild-type cells but is required in CIZ1-null cells where targeting, assembly, and enrichment for H3K27me3 and H2AK119ub occur de novo. In contrast, PLD1 is required for both de novo assembly and accumulation at preexisting assemblies and, in vitro, drives formation of a stable fibrillar network. Together they impart affinity for RNA and a complex relationship with repeat E of Xist. These data show that alternative splicing of two PLDs modulates CIZ1's ability to build large RNA-protein assemblies.

Indexed as

Nuclear ProteinsPrionsRNA, Long NoncodingX Chromosome InactivationAlternative SplicingAnimalsFemaleFibroblastsHistonesMiceX ChromosomeCiz1 protein, mouseHistonesNuclear ProteinsPrionsRNA, Long NoncodingXIST non-coding RNA

Identifiers

PMID35289833
PMCPMC8927971
OpenAlexW4220652044

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.