Evidence map›Paper›PMID 35289750›Full record

ArticleeLife2022

High-resolution mapping demonstrates inhibition of DNA excision repair by transcription factors.

Mingrui Duan, Smitha Sivapragasam, Jacob S Antony, Jenna Ulibarri, John M Hinz, Gregory M K Poon, John J Wyrick, Peng Mao

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. DNA Repair in Nucleosomes: Insights from Histone Modifications and Mutants.International journal of molecular sciences · 2024
    Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Mingrui DuanDepartment of Internal Medicine, University of New Mexico Comprehensive Cancer Center, University of New Mexico, Albuquerque, United States.ORCID 0000-0002-2352-1840
Smitha SivapragasamSchool of Molecular Biosciences, Washington State University, Pullman, United States.ORCID 0000-0002-5599-9988
Jacob S AntonySchool of Molecular Biosciences, Washington State University, Pullman, United States.ORCID 0000-0002-1481-9768
Jenna UlibarriDepartment of Internal Medicine, University of New Mexico Comprehensive Cancer Center, University of New Mexico, Albuquerque, United States.
John M HinzSchool of Molecular Biosciences, Washington State University, Pullman, United States.
Gregory M K PoonDepartment of Chemistry, Georgia State University, Atlanta, United States.
John J WyrickSchool of Molecular Biosciences, Washington State University, Pullman, United States.
Peng MaoDepartment of Internal Medicine, University of New Mexico Comprehensive Cancer Center, University of New Mexico, Albuquerque, United States.ORCID 0000-0003-2068-1344
Washington State University · USUniversity of New Mexico · USGeorgia State University · US

Funding

WOMEN'S CANCERS RESEARCH PROGRAMP30CA118100 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Yolanda Sanchez · 2005 to 2026
$57.1M
University of New Mexico Center for Metals in Biology and Medicine - equipment supplementP20GM130422 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Matthew J Campen · 2020 to 2026
$20.4M
Genome-wide analysis of the formation and mutagenesis of atypical UV photoproducts in skin cancerR01ES032814 · NIEHS · WASHINGTON STATE UNIVERSITY · PI STEVEN A ROBERTS, John J Wyrick · 2021 to 2026
$5.8M
Regulation of DNA Excision Repair in ChromatinR01ES028698 · NIEHS · WASHINGTON STATE UNIVERSITY · PI John J Wyrick · 2018 to 2026
$2.7M
Direct chemical control of the hematopoietic master transcription factor PU.1R01HL155178 · NHLBI · GEORGIA STATE UNIVERSITY · PI POON, GREGORY MAN KAI · 2021 to 2023
$1.2M
A cellular osmotic pressure sensorR21GM137160 · NIGMS · GEORGIA STATE UNIVERSITY · PI POON, GREGORY MAN KAI · 2020 to 2021
$428k
TC-NER IN THE REPAIR AND MUTAGENESIS OF DNA ALKYLATION DAMAGER21ES029302 · NIEHS · WASHINGTON STATE UNIVERSITY · PI MAO, PENG, WYRICK, JOHN J · 2018 to 2019
$421k
NCI NIH HHS P30 CA118100NHLBI NIH HHS R01 HL155178NIEHS NIH HHS R01 ES028698NIEHS NIH HHS R01 ES032814NIEHS NIH HHS R21 ES029302NIGMS NIH HHS P20 GM130422NIGMS NIH HHS R21 GM137160
6 · The paper itself

Abstract

DNA base damage arises frequently in living cells and needs to be removed by base excision repair (BER) to prevent mutagenesis and genome instability. Both the formation and repair of base damage occur in chromatin and are conceivably affected by DNA-binding proteins such as transcription factors (TFs). However, to what extent TF binding affects base damage distribution and BER in cells is unclear. Here, we used a genome-wide damage mapping method,

Indexed as

DNA RepairTranscription FactorsDNADNA DamageMethyl MethanesulfonateDNAMethyl MethanesulfonateTranscription FactorsBERcancer biologychromatingeneticsgenomicsMMSmutagenesisNERS. cerevisiae

Identifiers

PMID35289750
PMCPMC8970589
OpenAlexW4220917247

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.