Evidence map›Paper›PMID 35289611›Full record

ArticleJournal of chemical theory and computation2022

Protein p

Ada Y Chen, Juyong Lee, Ana Damjanovic, Bernard R Brooks

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. KaMLs for Predicting Protein pJournal of chemical theory and computation · 2025
    Article
  7. KaMLs for Predicting Protein pbioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Machine Learning IsotropicJournal of chemical theory and computation · 2024
    Article
  10. Accurately Predicting Protein pJournal of chemical theory and computation · 2023
    Article
  11. Swarm Smart Meta-Estimator for 2D/2D Heterostructure Design.Journal of chemical information and modeling · 2023
    Article
  12. Review
  13. Review
  14. AlphaFold, Artificial Intelligence (AI), and Allostery.The journal of physical chemistry. B · 2022
    Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ada Y ChenDepartment of Physics & Astronomy, Johns Hopkins University, Baltimore, Maryland 21218, United States.ORCID https://orcid.org/0000-0003-3236-3853
Juyong LeeDepartment of Chemistry, Division of Chemistry and Biochemistry, Kangwon National University, 1 Gangwondaehak-gil, Chuncheon 24341, Republic of Korea.ORCID https://orcid.org/0000-0003-1174-4358
Ana DamjanovicDepartment of Biophysics, Johns Hopkins University, Baltimore, Maryland 21218, United States.ORCID https://orcid.org/0000-0002-0781-8433
Bernard R BrooksLaboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, United States.ORCID https://orcid.org/0000-0002-3586-2730

Funding

Development Of Theoretical Methods For Studying Biological MacromoleculesZIAHL001051 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI BROOKS, BERNARD R · 2009 to 2025
$16.2M
Theoretical Methods to Study Biological MacromoleculesZ01HL001051 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI BROOKS, BERNARD R · 1998 to 2008
$1.4M
Intramural NIH HHS Z01 HL001051Intramural NIH HHS ZIA HL001051
6 · The paper itself

Abstract

Protonation states of ionizable protein residues modulate many essential biological processes. For correct modeling and understanding of these processes, it is crucial to accurately determine their p

Indexed as

Machine LearningProteinsAlgorithmsHumansKineticsProteins

Identifiers

PMID35289611
PMCPMC10510853

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.