Evidence map›Paper›PMID 35289369›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2022

The Biomedical Research Hub: a federated platform for patient research data.

Craig Barnes, Binam Bajracharya, Matthew Cannalte, Zakir Gowani, Will Haley, Taha Kass-Hout, Kyle Hernandez, Michael Ingram, Hara Prasad Juvvala, Gina Kuffel and 16 more

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
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  12. Research data warehouse best practices: catalyzing national data sharing through informatics innovation.Journal of the American Medical Informatics Association : JAMIA · 2022
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Craig BarnesCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Binam BajracharyaCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Matthew CannalteCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Zakir GowaniCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Will HaleyCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Taha Kass-HoutAmazon Web Services, Seattle, Washington, USA.
Kyle HernandezCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Michael IngramCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Hara Prasad JuvvalaCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.ORCID 0000-0002-7771-1949
Gina KuffelCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Plamen MartinovOpen Commons Consortium, Chicago, Illinois, USA.
J Montgomery MaxwellCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
John McCannCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Ankit MalhotraAmazon Web Services, Seattle, Washington, USA.
Noah Metoki-ShlubskyCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Chris MeyerCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Andre ParedesCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Jawad QureshiCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Xenia RitterCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Philip SchummDepartment of Public Health Sciences, University of Chicago, Chicago, Illinois, USA.
Mingfei ShaoCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Urvi ShethOpen Commons Consortium, Chicago, Illinois, USA.
Trevar SimmonsCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Alexander VanTolCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Zhenyu ZhangCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.
Robert L GrossmanCenter for Translational Data Science, University of Chicago, Chicago, Illinois, USA.ORCID 0000-0003-3741-5739

Funding

U2C Kids First Admin Supplement - data transferU2CHL138346 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI RESNICK, ADAM CAIN · 2017 to 2022
$21.5M
NHLBI NIH HHS U2C HL138346NIH HHS U2CHL138346
6 · The paper itself

Abstract

objectiveThe objective was to develop and operate a cloud-based federated system for managing, analyzing, and sharing patient data for research purposes, while allowing each resource sharing patient data to operate their component based upon their own governance rules. The federated system is called the Biomedical Research Hub (BRH). MATERIALS AND

methodsThe BRH is a cloud-based federated system built over a core set of software services called framework services. BRH framework services include authentication and authorization, services for generating and assessing findable, accessible, interoperable, and reusable (FAIR) data, and services for importing and exporting bulk clinical data. The BRH includes data resources providing data operated by different entities and workspaces that can access and analyze data from one or more of the data resources in the BRH.

resultsThe BRH contains multiple data commons that in aggregate provide access to over 6 PB of research data from over 400 000 research participants. DISCUSSION AND

conclusionWith the growing acceptance of using public cloud computing platforms for biomedical research, and the growing use of opaque persistent digital identifiers for datasets, data objects, and other entities, there is now a foundation for systems that federate data from multiple independently operated data resources that expose FAIR application programming interfaces, each using a separate data model. Applications can be built that access data from one or more of the data resources.

Indexed as

Biomedical ResearchCloud ComputingHumansSoftwareclinical research data warehousedata commonsdata ecosystempatient data repositoryvirtual data warehouse

Identifiers

PMID35289369
PMCPMC8922179

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.