Evidence map›Paper›PMID 35289327›Full record

ArticleNature chemical biology2022

Metabolism of a hybrid algal galactan by members of the human gut microbiome.

Craig S Robb, Joanne K Hobbs, Benjamin Pluvinage, Greta Reintjes, Leeann Klassen, Stephanie Monteith, Greta Giljan, Carolyn Amundsen, Chelsea Vickers, Andrew G Hettle and 7 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Structural insights into a fucosidase involved in fucoidan degradation.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  9. Article
  10. Article
  11. Is theFood chemistry. Molecular sciences · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Craig S Robb *Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada.
Joanne K Hobbs *Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada.
Benjamin PluvinageDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada.
Greta ReintjesLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, Alberta, Canada.ORCID http://orcid.org/0000-0001-7085-4683
Leeann KlassenLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, Alberta, Canada.
Stephanie MonteithLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, Alberta, Canada.
Greta GiljanMax Planck Institute for Marine Microbiology, Bremen, Germany.ORCID http://orcid.org/0000-0002-7868-4495
Carolyn AmundsenLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, Alberta, Canada.
Chelsea VickersDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada.
Andrew G HettleDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada.
Rory HillsDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada.ORCID http://orcid.org/0000-0002-5698-9538
NitinIrving K Barber Faculty of Science, The University of British Columbia, Department of Chemistry, Kelowna, British Columbia, Canada.ORCID http://orcid.org/0000-0002-1662-6011
Xiaohui XingLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, Alberta, Canada.
Tony MontinaSouthern Alberta Genome Sciences Centre, Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta, Canada.ORCID http://orcid.org/0000-0002-9934-9856
Wesley F ZandbergIrving K Barber Faculty of Science, The University of British Columbia, Department of Chemistry, Kelowna, British Columbia, Canada.ORCID http://orcid.org/0000-0002-5857-9006
D Wade AbbottLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, Alberta, Canada.ORCID http://orcid.org/0000-0003-4893-5799
Alisdair B BorastonDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada. boraston@uvic.ca.ORCID http://orcid.org/0000-0001-6417-0592

Funding

CIHR
6 · The paper itself

Abstract

Native porphyran is a hybrid of porphryan and agarose. As a common element of edible seaweed, this algal galactan is a frequent component of the human diet. Bacterial members of the human gut microbiota have acquired polysaccharide utilization loci (PULs) that enable the metabolism of porphyran or agarose. However, the molecular mechanisms that underlie the deconstruction and use of native porphyran remains incompletely defined. Here, we have studied two human gut bacteria, porphyranolytic Bacteroides plebeius and agarolytic Bacteroides uniformis, that target native porphyran. This reveals an exo-based cycle of porphyran depolymerization that incorporates a keystone sulfatase. In both PULs this cycle also works together with a PUL-encoded agarose depolymerizing machinery to synergistically reduce native porphyran to monosaccharides. This provides a framework for understanding the deconstruction of a hybrid algal galactan, and insight into the competitive and/or syntrophic relationship of gut microbiota members that target rare nutrients.

Indexed as

Gastrointestinal MicrobiomeBacteriaGalactansHumansPolysaccharidesSepharoseGalactansPolysaccharidesSepharose

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.