Evidence map›Paper›PMID 35289316›Full record

ArticleThe Journal of clinical investigation2022

Genetically programmed alternative splicing of NEMO mediates an autoinflammatory disease phenotype.

Younglang Lee, Alex W Wessel, Jiazhi Xu, Julia G Reinke, Eries Lee, Somin M Kim, Amy P Hsu, Jevgenia Zilberman-Rudenko, Sha Cao, Clinton Enos and 13 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 39 citations in OpenAlex.

  1. Autosomal recessive A20 zinc finger 7 mutation is associated with early-onset lupus-like disease.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
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  5. Monogenic disorders of the TNF signalling pathway.Nature reviews. Rheumatology · 2026
    Review
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  15. Review
  16. Nucleotide metabolism, leukodystrophies, and CNS pathology.Journal of inherited metabolic disease · 2024
    Review
  17. Review
  18. Get Spliced: Uniting Alternative Splicing and Arthritis.International journal of molecular sciences · 2024
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 3 countries.

Younglang LeeImmunodeficiency and Inflammatory Disease Unit and.
Alex W WesselImmunodeficiency and Inflammatory Disease Unit and.
Jiazhi XuIndiana University School of Medicine, Wells Center for Pediatric Research, Indianapolis, Indiana, USA.
Julia G ReinkeIndiana University School of Medicine, Wells Center for Pediatric Research, Indianapolis, Indiana, USA.
Eries LeeImmunodeficiency and Inflammatory Disease Unit and.
Somin M KimImmunodeficiency and Inflammatory Disease Unit and.
Amy P HsuImmunopathogenesis Section, Laboratory of Clinical Immunology and Microbiology (LCIM), National Institute of Allergy and Infectious Diseases, NIH, Bethesda, Maryland, USA.
Jevgenia Zilberman-RudenkoImmunodeficiency and Inflammatory Disease Unit and.
Sha CaoDepartment of Biostatistics, Indiana University, School of Medicine, Indianapolis, Indiana, USA.
Clinton EnosImmunodeficiency and Inflammatory Disease Unit and.
Stephen R BrooksBiodata Mining and Discovery Section, Office of Science and Technology, NIAMS and.
Zuoming DengBiodata Mining and Discovery Section, Office of Science and Technology, NIAMS and.
Bin LinTranslational Autoinflammatory Diseases Section (TADS), LCIM, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, Maryland, USA.
Adriana A de JesusTranslational Autoinflammatory Diseases Section (TADS), LCIM, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, Maryland, USA.
Daniel N HupaloThe American Genome Center, Collaborative Health Initiative Research Program, Uniformed Services University of the Health Sciences, Bethesda, Maryland, USA.
Daniela Gp PiottoEscola Paulista de Medicina/Universidade Federal de São Paulo, São Paulo, Brazil.
Maria T TerreriEscola Paulista de Medicina/Universidade Federal de São Paulo, São Paulo, Brazil.
Victoria R DimitriadesDivision of Infectious Diseases, Immunology & Allergy University of California Davis Health, Sacramento, California, USA.
Clifton L DalgardThe American Genome Center, Collaborative Health Initiative Research Program, Uniformed Services University of the Health Sciences, Bethesda, Maryland, USA.
Steven M HollandImmunopathogenesis Section, Laboratory of Clinical Immunology and Microbiology (LCIM), National Institute of Allergy and Infectious Diseases, NIH, Bethesda, Maryland, USA.
Raphaela Goldbach-ManskyTranslational Autoinflammatory Diseases Section (TADS), LCIM, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, Maryland, USA.
Richard M SiegelImmunoregulation Section, Autoimmunity Branch, National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS), NIH, Bethesda, Maryland, USA.
Eric P HansonIndiana University School of Medicine, Wells Center for Pediatric Research, Indianapolis, Indiana, USA.
National Institute of Arthritis and Musculoskeletal and Skin Diseases · USNational Institute of Allergy and Infectious Diseases · USIndiana University – Purdue University Indianapolis · USOffice of Science · USUniformed Services University of the Health Sciences · USUniversidade Federal de São Paulo · BRNovartis (Switzerland) · CHUniversity of California, Davis · US

Funding

Pathogenesis, and Outcome of Autoinflammatory Diseases, NOMID/CAPS, DIRA, CANDLE, SAVI, NLRC4-MAS, Stills-like Diseases, and other Undifferentiated Autoinflammatory DiseasesZIAAI001220 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI GOLDBACH-MANSKY, RAPHAELA · 2017 to 2025
$22.3M
Applying Bioinformatics to Research in Immune, Muscle, and Bone DiseasesZICAR041173 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI SUN, HONG-WEI · 2021 to 2025
$10.3M
Genetic disorders of immunodeficiency and inflammatory diseaseZIAAR041187 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI HANSON, ERIC · 2010 to 2018
$5.3M
Intramural NIH HHS ZIA AI001220Intramural NIH HHS ZIA AR041187
6 · The paper itself

Abstract

Host defense and inflammation are regulated by the NF-κB essential modulator (NEMO), a scaffolding protein with a broad immune cell and tissue expression profile. Hypomorphic mutations in inhibitor of NF-κB kinase regulatory subunit gamma (IKBKG) encoding NEMO typically present with immunodeficiency. Here, we characterized a pediatric autoinflammatory syndrome in 3 unrelated male patients with distinct X-linked IKBKG germline mutations that led to overexpression of a NEMO protein isoform lacking the domain encoded by exon 5 (NEMO-Δex5). This isoform failed to associate with TANK binding kinase 1 (TBK1), and dermal fibroblasts from affected patients activated NF-κB in response to TNF but not TLR3 or RIG-I-like receptor (RLR) stimulation when isoform levels were high. By contrast, T cells, monocytes, and macrophages that expressed NEMO-Δex5 exhibited increased NF-κB activation and IFN production, and blood cells from these patients expressed a strong IFN and NF-κB transcriptional signature. Immune cells and TNF-stimulated dermal fibroblasts upregulated the inducible IKK protein (IKKi) that was stabilized by NEMO-Δex5, promoting type I IFN induction and antiviral responses. These data revealed how IKBKG mutations that lead to alternative splicing of skipping exon 5 cause a clinical phenotype we have named NEMO deleted exon 5 autoinflammatory syndrome (NDAS), distinct from the immune deficiency syndrome resulting from loss-of-function IKBKG mutations.

Indexed as

Hereditary Autoinflammatory DiseasesImmunologic Deficiency SyndromesAlternative SplicingChildHumansI-kappa B KinaseMaleNF-kappa BPhenotypeI-kappa B KinaseIKBKG protein, humanNF-kappa BGenetic diseasesGeneticsImmunologyInflammationInnate immunitySignal transduction

Identifiers

PMID35289316
PMCPMC8920334
OpenAlexW4220747096

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.