Evidence map›Paper›PMID 35288721›Full record

ArticleNature metabolism2022

Ifnar gene variants influence gut microbial production of palmitoleic acid and host immune responses to tuberculosis.

Lingming Chen, Guoliang Zhang, Guobao Li, Wei Wang, Zhenhuang Ge, Yi Yang, Xing He, Zhi Liu, Zhiyi Zhang, Qiongdan Mai and 13 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature metabolism, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 57 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Microbe on the move:Journal of bacteriology · 2026
    Review
  4. Article
  5. Article
  6. Ornithine lipids fromGut microbes · 2025
    Article
  7. Review
  8. Review
  9. The Biology ofAnnual review of microbiology · 2025
    Review
  10. Article
  11. Review
  12. Article
  13. Observational
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Microbiota and Immunity during Respiratory Infections: Lung and Gut Affair.International journal of molecular sciences · 2024
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 2 countries.

Lingming Chen *Department of Microbiology, Zhongshan School of Medicine, Key Laboratory for Tropical Diseases Control of the Ministry of Education, Sun Yat-sen University, Guangzhou, China.
Guoliang Zhang *National Clinical Research Center for Infection Diseases, Guangdong Key Laboratory for Emerging Infectious Diseases, Shenzhen Third People's Hospital, Southern University of Science and Technology, Shenzhen, China.ORCID http://orcid.org/0000-0002-3617-5449
Guobao Li *National Clinical Research Center for Infection Diseases, Guangdong Key Laboratory for Emerging Infectious Diseases, Shenzhen Third People's Hospital, Southern University of Science and Technology, Shenzhen, China.
Wei Wang *Department of Clinical Laboratory, Foshan Fourth People's Hospital, Foshan, China.
Zhenhuang Ge *School of Chemistry, Sun Yat-sen University, Guangzhou, China.ORCID http://orcid.org/0000-0002-1189-7285
Yi YangDepartment of Microbiology, Zhongshan School of Medicine, Key Laboratory for Tropical Diseases Control of the Ministry of Education, Sun Yat-sen University, Guangzhou, China.
Xing HeNational Clinical Research Center for Infection Diseases, Guangdong Key Laboratory for Emerging Infectious Diseases, Shenzhen Third People's Hospital, Southern University of Science and Technology, Shenzhen, China.
Zhi LiuNational Clinical Research Center for Infection Diseases, Guangdong Key Laboratory for Emerging Infectious Diseases, Shenzhen Third People's Hospital, Southern University of Science and Technology, Shenzhen, China.
Zhiyi ZhangDepartment of Microbiology, Zhongshan School of Medicine, Key Laboratory for Tropical Diseases Control of the Ministry of Education, Sun Yat-sen University, Guangzhou, China.
Qiongdan MaiDepartment of Microbiology, Zhongshan School of Medicine, Key Laboratory for Tropical Diseases Control of the Ministry of Education, Sun Yat-sen University, Guangzhou, China.
Yiwei ChenDepartment of Microbiology, Zhongshan School of Medicine, Key Laboratory for Tropical Diseases Control of the Ministry of Education, Sun Yat-sen University, Guangzhou, China.
Zixu ChenDepartment of Microbiology, Zhongshan School of Medicine, Key Laboratory for Tropical Diseases Control of the Ministry of Education, Sun Yat-sen University, Guangzhou, China.
Jiang PiDepartment of Microbiology and Immunology, Center for Primate Biomedical Research, University of Illinois College of Medicine, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-4418-1248
Shuai YangKey Laboratory of Gene Function and Regulation of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.
Jun CuiKey Laboratory of Gene Function and Regulation of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.
Haipeng LiuShanghai Key Lab of Tuberculosis, Shanghai Pulmonary Hospital, School of Medicine, Tongji University, Shanghai, China.ORCID http://orcid.org/0000-0002-3338-6291
Ling ShenDepartment of Microbiology and Immunology, Center for Primate Biomedical Research, University of Illinois College of Medicine, Chicago, IL, USA.
Lingchan ZengClinical Research Center, Department of Medical Records Management, Guanghua School of Stomatology, Hospital of Stomatology, Sun Yat-sen University, Guangzhou, China.
Lin ZhouGuangdong Center for Tuberculosis Control, National Clinical Research Center for Tuberculosis, Guangzhou, China.
Xinchun ChenDepartment of Pathogen Biology, Shenzhen University School of Medicine, Shenzhen, China.
Baoxue GeShanghai Key Lab of Tuberculosis, Shanghai Pulmonary Hospital, School of Medicine, Tongji University, Shanghai, China.ORCID http://orcid.org/0000-0002-4086-8299
Zheng W ChenDepartment of Microbiology and Immunology, Center for Primate Biomedical Research, University of Illinois College of Medicine, Chicago, IL, USA.
Gucheng ZengDepartment of Microbiology, Zhongshan School of Medicine, Key Laboratory for Tropical Diseases Control of the Ministry of Education, Sun Yat-sen University, Guangzhou, China. zenggch@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-2665-2854
Sun Yat-sen University · CNSouthern University of Science and Technology · CNUniversity of Illinois Urbana-Champaign · USTongji University · CNCenter for Tuberculosis Control of Guangdong Province · CNShenzhen University · CNThe Fourth People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Both host genetics and the gut microbiome have important effects on human health, yet how host genetics regulates gut bacteria and further determines disease susceptibility remains unclear. Here, we find that the gut microbiome pattern of participants with active tuberculosis is characterized by a reduction of core species found across healthy individuals, particularly Akkermansia muciniphila. Oral treatment of A. muciniphila or A. muciniphila-mediated palmitoleic acid strongly inhibits tuberculosis infection through epigenetic inhibition of tumour necrosis factor in mice infected with Mycobacterium tuberculosis. We use three independent cohorts comprising 6,512 individuals and identify that the single-nucleotide polymorphism rs2257167 'G' allele of type I interferon receptor 1 (encoded by IFNAR1 in humans) contributes to stronger type I interferon signalling, impaired colonization and abundance of A. muciniphila, reduced palmitoleic acid production, higher levels of tumour necrosis factor, and more severe tuberculosis disease in humans and transgenic mice. Thus, host genetics are critical in modulating the structure and functions of gut microbiome and gut microbial metabolites, which further determine disease susceptibility.

Indexed as

Gastrointestinal MicrobiomeTuberculosisAnimalsDisease SusceptibilityFatty Acids, MonounsaturatedHumansImmunityMiceReceptor, Interferon alpha-betaTumor Necrosis FactorsVerrucomicrobiaFatty Acids, MonounsaturatedIFNAR1 protein, humanpalmitoleic acidReceptor, Interferon alpha-betaTumor Necrosis Factors

Identifiers

PMID35288721
OpenAlexW4220911635

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.