Evidence map›Paper›PMID 35288693›Full record

SynthesisNature medicine2022

Single-cell transcriptomics reveals a distinct developmental state of KMT2A-rearranged infant B-cell acute lymphoblastic leukemia.

Eleonora Khabirova, Laura Jardine, Tim H H Coorens, Simone Webb, Taryn D Treger, Justin Engelbert, Tarryn Porter, Elena Prigmore, Grace Collord, Alice Piapi and 10 more

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
19.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 87 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 2 countries.

Eleonora Khabirova *Wellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-5891-6789
Laura Jardine *Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-4495-8205
Tim H H CoorensWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-5826-3554
Simone WebbBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-3058-8952
Taryn D TregerWellcome Sanger Institute, Hinxton, UK.
Justin EngelbertBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.
Tarryn PorterWellcome Sanger Institute, Hinxton, UK.
Elena PrigmoreWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0001-8870-0316
Grace CollordWellcome Sanger Institute, Hinxton, UK.
Alice PiapiGreat Ormond Street Hospital for Children NHS Foundation Trust and NIHR Great Ormond Street Hospital Biomedical Research Centre, London, UK.ORCID http://orcid.org/0000-0001-8251-3309
Sarah A TeichmannWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-6294-6366
Sarah InglottGreat Ormond Street Hospital for Children NHS Foundation Trust and NIHR Great Ormond Street Hospital Biomedical Research Centre, London, UK.
Owen WilliamsUCL Great Ormond Street Institute of Child Health, London, UK.ORCID http://orcid.org/0000-0002-1760-6880
Olaf HeidenreichPrincess Maxima Center for Pediatric Oncology, Utrecht, the Netherlands.ORCID http://orcid.org/0000-0001-5404-6483
Matthew D YoungWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0003-0937-5290
Karin StraathofGreat Ormond Street Hospital for Children NHS Foundation Trust and NIHR Great Ormond Street Hospital Biomedical Research Centre, London, UK.
Simon BomkenWolfson Childhood Cancer Research Centre, Translational and Clinical Research Institute, Newcastle University, Newcastle upon Tyne, UK. s.n.bomken@newcastle.ac.uk.ORCID http://orcid.org/0000-0001-9163-5738
Jack BartramGreat Ormond Street Hospital for Children NHS Foundation Trust and NIHR Great Ormond Street Hospital Biomedical Research Centre, London, UK. Jack.Bartram@gosh.nhs.uk.ORCID http://orcid.org/0000-0003-1573-2506
Muzlifah HaniffaWellcome Sanger Institute, Hinxton, UK. m.a.haniffa@newcastle.ac.uk.ORCID http://orcid.org/0000-0002-3927-2084
Sam BehjatiWellcome Sanger Institute, Hinxton, UK. sb31@sanger.ac.uk.ORCID http://orcid.org/0000-0002-6600-7665
Wellcome Sanger Institute · GBGreat Ormond Street Hospital · GBNewcastle upon Tyne Hospitals NHS Foundation Trust · GBGreat Ormond Street Hospital for Children NHS Foundation Trust · GBNewcastle University · GBUniversity of Cambridge · GBPrincess Máxima Center · NLUniversity College Hospital · GB

Funding

Cancer Research UK A12788Department of HealthMedical Research Council MR/S021590/1Wellcome Trust 107931Wellcome Trust 110104Wellcome Trust 206194
6 · The paper itself

Abstract

KMT2A-rearranged infant ALL is an aggressive childhood leukemia with poor prognosis. Here, we investigated the developmental state of KMT2A-rearranged infant B-cell acute lymphoblastic leukemia (B-ALL) using bulk messenger RNA (mRNA) meta-analysis and examination of single lymphoblast transcriptomes against a developing bone marrow reference. KMT2A-rearranged infant B-ALL was uniquely dominated by an early lymphocyte precursor (ELP) state, whereas less adverse NUTM1-rearranged infant ALL demonstrated signals of later developing B cells, in line with most other childhood B-ALLs. We compared infant lymphoblasts with ELP cells and revealed that the cancer harbored hybrid myeloid-lymphoid features, including nonphysiological antigen combinations potentially targetable to achieve cancer specificity. We validated surface coexpression of exemplar combinations by flow cytometry. Through analysis of shared mutations in separate leukemias from a child with infant KMT2A-rearranged B-ALL relapsing as AML, we established that KMT2A rearrangement occurred in very early development, before hematopoietic specification, emphasizing that cell of origin cannot be inferred from the transcriptional state.

Indexed as

Precursor Cell Lymphoblastic Leukemia-LymphomaTranscriptomeBone MarrowChildGene RearrangementHumansInfantMutationMyeloid-Lymphoid Leukemia ProteinMyeloid-Lymphoid Leukemia Protein

Identifiers

PMID35288693
PMCPMC9018413
OpenAlexW4220983679

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.