ArticleNature plants2022
Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition.
Article in Nature plants, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.
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55 citing papers in PubMed.
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- Empowering Plant Biotechnology Research: Super-Pangenomes as a Novel Arsenal for Crop Breeding and Improvement.Molecular biotechnology · 2026Review
- Constitution and function of intergenic genome regions in cultivated versus annual wild soybean in China.Journal of integrative plant biology · 2026Article
- Comprehensive analysis of maBIOTECH · 2026Article
- Mining Two Decades of Soybean Genomics Literature Using Rule-Based Text Mining: Chromosome-Resolved Patterns ofInternational journal of molecular sciences · 2026Article
- Centromere evolution in annual and perennial soybeans and its implication for hybridization in cultivated species.Genome biology · 2026Article
- Accessing crop genetic diversity via pangenomics.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Genome-Wide Identification and Salt Tolerance Analysis of theInternational journal of molecular sciences · 2026Article
- Plastome evolution and phylogenomics of Glycine (Leguminosae: Papilionoideae).BMC plant biology · 2026Article
- Ectopic cambia in wisteria vines are associated with the expression of conserved KNOX genes.Nature communications · 2026Article
- Chromosome-level genome assembly of wild perennial soybean Glycine canescens.Scientific data · 2026Article
- Characterization of theGenes · 2025Article
- Genome-Wide Identification of theBiology · 2025Article
- From duplication to divergence: Single-cell insights into transcriptional and cis-regulatory landscapes in soybean.The Plant cell · 2025Article
- Chlorophyllide a Oxygenase (CAO) Gene Duplication Across the Viridiplantae.Journal of molecular evolution · 2025Article
- Super-pangenome analyses across 35 accessions of 23 Avena species highlight their complex evolutionary history and extensive genomic diversity.Nature genetics · 2025Article
- A telomere-to-telomere genome of wild soybean with resistance to soybean cyst nematode X12.Scientific data · 2025Article
- Pangenome analysis provides insights into legume evolution and breeding.Nature genetics · 2025Article
- Article
- New crops on the block: effective strategies to broaden our food, fibre, and fuel repertoire in the face of increasingly volatile agricultural systems.Journal of experimental botany · 2025Review
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14 authors.
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Abstract
Polyploidy and life-strategy transitions between annuality and perenniality often occur in flowering plants. However, the evolutionary propensities of polyploids and the genetic bases of such transitions remain elusive. We assembled chromosome-level genomes of representative perennial species across the genus Glycine including five diploids and a young allopolyploid, and constructed a Glycine super-pangenome framework by integrating 26 annual soybean genomes. These perennial diploids exhibit greater genome stability and possess fewer centromere repeats than the annuals. Biased subgenomic fractionation occurred in the allopolyploid, primarily by accumulation of small deletions in gene clusters through illegitimate recombination, which was associated with pre-existing local subgenomic differentiation. Two genes annotated to modulate vegetative-reproductive phase transition and lateral shoot outgrowth were postulated as candidates underlying the perenniality-annuality transition. Our study provides insights into polyploid genome evolution and lays a foundation for unleashing genetic potential from the perennial gene pool for soybean improvement.
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