Evidence map›Paper›PMID 35288587›Full record

ArticleNPJ genomic medicine2022

Whole genome sequencing delineates regulatory, copy number, and cryptic splice variants in early onset cardiomyopathy.

Robert Lesurf, Abdelrahman Said, Oyediran Akinrinade, Jeroen Breckpot, Kathleen Delfosse, Ting Liu, Roderick Yao, Gabrielle Persad, Fintan McKenna, Ramil R Noche and 28 more

Open access · goldAbstract read
In one paragraph

Article in NPJ genomic medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 2 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 2 syntheses or guidelines pooled it, 38 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Transcriptomic Analysis ofInternational journal of molecular sciences · 2026
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  5. Transcriptomic Analysis ofbioRxiv : the preprint server for biology · 2026
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  19. Article
  20. Age and Sex Differences in the Genetics of Cardiomyopathy.Journal of cardiovascular translational research · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 18 institutions in 8 countries.

Robert Lesurf *Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0001-7095-1491
Abdelrahman Said *Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-3960-6670
Oyediran AkinrinadeGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-6797-6353
Jeroen BreckpotDepartment of Human Genetics, UZ Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-0734-5154
Kathleen DelfosseGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0001-9837-7145
Ting LiuGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-8775-5507
Roderick YaoGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Gabrielle PersadGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0003-4680-527X
Fintan McKennaGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Ramil R NocheGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-4894-5682
Winona OliverosLife Sciences Department, Barcelona Supercomputing Center, Barcelona, Catalonia, Spain.ORCID http://orcid.org/0000-0002-3646-8874
Kaia MattioliDivision of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4536-9237
Shreya ShahGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Anastasia MironGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Qian YangGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Guoliang MengDevelopmental and Stem Cell Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Michelle Chan Seng YuePrincess Margaret Cancer Center, University Health Network, Toronto, ON, Canada.
Wilson W L SungThe Centre for Applied Genomics, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-4703-5118
Bhooma ThiruvahindrapuramThe Centre for Applied Genomics, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0003-1128-008X
Jane LougheedDivision of Cardiology, Children's Hospital of Eastern Ontario, Ottawa, ON, Canada.ORCID http://orcid.org/0000-0003-3714-1301
Erwin OechslinPeter Munk Cardiac Centre, Division of Cardiology, Toronto General Hospital, University of Toronto, Toronto, ON, Canada.ORCID http://orcid.org/0000-0001-7084-8494
Tapas MondalDepartment of Pediatrics, Hamilton Health Sciences Centre, Hamilton, ON, Canada.ORCID http://orcid.org/0000-0003-2077-1710
Lynn BerginDivision of Cardiology, London Health Sciences Centre, London, ON, Canada.ORCID http://orcid.org/0000-0002-5226-9349
John SmytheDepartment of Pediatrics, Kingston General Hospital, Kingston, ON, Canada.
Shashank JayappaCardiovascular Biology and Disease Theme, Institute for Stem Cell Science and Regenerative Medicine, Bangalore (inStem), Bangalore, India.ORCID http://orcid.org/0000-0002-6751-8344
Vinay J RaoCardiovascular Biology and Disease Theme, Institute for Stem Cell Science and Regenerative Medicine, Bangalore (inStem), Bangalore, India.ORCID http://orcid.org/0000-0002-2188-7670
Jayaprakash ShentharDepartment of Cardiology, Sri Jayadeva Institute of Cardiovascular Sciences and Research, Bengaluru, India.ORCID http://orcid.org/0000-0003-4509-7515
Perundurai S DhandapanyCardiovascular Biology and Disease Theme, Institute for Stem Cell Science and Regenerative Medicine, Bangalore (inStem), Bangalore, India.
Christopher SemsarianAgnes Ginges Centre for Molecular Cardiology at Centenary Institute, The University of Sydney, Sydney, Australia.ORCID http://orcid.org/0000-0001-6441-274X
Robert G WeintraubCardiology Department, Royal Children's Hospital, Melbourne, Australia.
Richard D BagnallDepartment of Cardiology, Royal Prince Alfred Hospital, Sydney, Australia.ORCID http://orcid.org/0000-0002-2476-9864
Jodie InglesAgnes Ginges Centre for Molecular Cardiology at Centenary Institute, The University of Sydney, Sydney, Australia.
Genomics England Research Consortium
Marta MeléLife Sciences Department, Barcelona Supercomputing Center, Barcelona, Catalonia, Spain.ORCID http://orcid.org/0000-0001-8874-6453
Philipp G MaassGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-2742-8301
James EllisDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-4400-0091
Stephen W SchererGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-8326-1999
Seema MitalGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada. seema.mital@sickkids.ca.ORCID http://orcid.org/0000-0002-7643-4484
University of Toronto · CAGenomics England · GBQueen Mary University of London · GBHospital for Sick Children · CAThe University of Sydney · AUSri Jayadeva Institute of Cardiovascular Sciences and Research · INInstitute for Stem Cell Biology and Regenerative Medicine · INBarcelona Supercomputing Center · ESUniversitair Ziekenhuis Leuven · BEUniversity Health Network · CABrigham and Women's Hospital · USChildren's Hospital of Eastern Ontario · CAHealth Sciences Centre · CAKingston General Hospital · CALondon Health Sciences Centre · CARoyal Children's Hospital · AURoyal Prince Alfred Hospital · AUSt. George's University · GD

Funding

Medical Research Council MC_EX_MR/M009203/1Medical Research Council MC_PC_14089Medical Research Council MR/M009203/1Wellcome Trust
6 · The paper itself

Abstract

Cardiomyopathy (CMP) is a heritable disorder. Over 50% of cases are gene-elusive on clinical gene panel testing. The contribution of variants in non-coding DNA elements that result in cryptic splicing and regulate gene expression has not been explored. We analyzed whole-genome sequencing (WGS) data in a discovery cohort of 209 pediatric CMP patients and 1953 independent replication genomes and exomes. We searched for protein-coding variants, and non-coding variants predicted to affect the function or expression of genes. Thirty-nine percent of cases harbored pathogenic coding variants in known CMP genes, and 5% harbored high-risk loss-of-function (LoF) variants in additional candidate CMP genes. Fifteen percent harbored high-risk regulatory variants in promoters and enhancers of CMP genes (odds ratio 2.25, p = 6.70 × 10

Identifiers

PMID35288587
PMCPMC8921194
OpenAlexW4220661428

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.