Evidence map›Paper›PMID 35288582›Full record

ArticleScientific reports2022

Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9.

Matthew T Biegler, Olivier Fedrigo, Paul Collier, Jacquelyn Mountcastle, Bettina Haase, Hagen U Tilgner, Erich D Jarvis

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Gene regulatory co-option drives birdsong neural circuit specialization.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Establishment and Characterization of a Chicken Myoblast Cell Line.International journal of molecular sciences · 2024
    Article
  4. Genomic loss of GPR108 disrupts AAV transduction in birds.bioRxiv : the preprint server for biology · 2024
    Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Matthew T BieglerLaboratory of Neurogenetics of Language, The Rockefeller University, 1230 York Avenue, New York, NY, 10065, USA. mbiegler@rockefeller.edu.
Olivier FedrigoVertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065, USA.
Paul CollierCenter for Neurogenetics, Graduate School of Medical Sciences, Weil Cornell Medical Center, New York, NY, 10065, USA.
Jacquelyn MountcastleVertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065, USA.
Bettina HaaseVertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065, USA.
Hagen U TilgnerCenter for Neurogenetics, Graduate School of Medical Sciences, Weil Cornell Medical Center, New York, NY, 10065, USA.
Erich D JarvisLaboratory of Neurogenetics of Language, The Rockefeller University, 1230 York Avenue, New York, NY, 10065, USA. ejarvis@rockefeller.edu.

Funding

Integrative Single Cell isoform and chromatin accessibility Mapping of Chronic Opioid Exposure in Cognitive Brain Areas in HIVU01DA053625 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI MILNER, TERESA A, NDHLOVU, LISHOMWA C · 2021 to 2025
$4.0M
Cross-species conservation of cell-type and single-cell specific isoform expressionR01GM135247 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI TILGNER, HAGEN ULRICH · 2020 to 2023
$2.3M
Single cell isoform expression across mouse brain regions and developmentRF1MH121267 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI TILGNER, HAGEN ULRICH · 2019 to 2019
$1.5M
Howard Hughes Medical InstituteNIDA NIH HHS U01 DA053625NIGMS NIH HHS R01 GM135247NIMH NIH HHS RF1 MH121267
6 · The paper itself

Abstract

The zebra finch is one of the most commonly studied songbirds in biology, particularly in genomics, neuroscience and vocal communication. However, this species lacks a robust cell line for molecular biology research and reagent optimization. We generated a cell line, designated CFS414, from zebra finch embryonic fibroblasts using the SV40 large and small T antigens. This cell line demonstrates an improvement over previous songbird cell lines through continuous and density-independent growth, allowing for indefinite culture and monoclonal line derivation. Cytogenetic, genomic, and transcriptomic profiling established the provenance of this cell line and identified the expression of genes relevant to ongoing songbird research. Using this cell line, we disrupted endogenous gene sequences using S.aureus Cas9 and confirmed a stress-dependent localization response of a song system specialized gene, SAP30L. The utility of CFS414 cells enhances the comprehensive molecular potential of the zebra finch and validates cell immortalization strategies in a songbird species.

Indexed as

FinchesAnimalsCell LineCRISPR-Cas SystemsGenomeGenomics

Identifiers

PMID35288582
PMCPMC8921232

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.