Evidence map›Paper›PMID 35285678›Full record

ArticlemSystems2022

Integrated Omics Approaches Revealed the Osmotic Stress-Responsive Genes and Microbiota in Gill of Marine Medaka.

Keng Po Lai, Peng Zhu, Delbert Almerick T Boncan, Lu Yang, Cherry Chi Tim Leung, Jeff Cheuk Hin Ho, Xiao Lin, Ting Fung Chan, Richard Yuen Chong Kong, William Ka Fai Tse

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Keng Po LaiLaboratory of Environmental Pollution and Integrative Omics, Guilin Medical University, Guilin, China.
Peng ZhuGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Beibu Gulf University, Qinzhou, China.
Delbert Almerick T BoncanSchool of Life Sciences, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Konggrid.10784.3a, Hong Kong SAR, China.
Lu YangGuangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, Beibu Gulf University, Qinzhou, China.
Cherry Chi Tim LeungDepartment of Chemistry, City University of Hong Konggrid.35030.35, Hong Kong SAR, China.
Jeff Cheuk Hin HoDepartment of Chemistry, City University of Hong Konggrid.35030.35, Hong Kong SAR, China.
Xiao LinDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Ting Fung ChanSchool of Life Sciences, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Konggrid.10784.3a, Hong Kong SAR, China.
Richard Yuen Chong KongDepartment of Chemistry, City University of Hong Konggrid.35030.35, Hong Kong SAR, China.
William Ka Fai TseLaboratory of Developmental Disorders and Toxicology, Center for Promotion of International Education and Research, Faculty of Agriculture, Kyushu University, Fukuoka, Japan.ORCID 0000-0002-3738-0460
City University of Hong Kong · HKBeibu Gulf University · CNChinese University of Hong Kong · HKIcahn School of Medicine at Mount Sinai · USKyushu University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aquatic fishes face osmotic stress continuously, and the gill is the first tissue that senses and responds to the external osmotic challenges. However, the understandings of how the gill microbiota could respond to osmotic stress and their potential host-bacterium relationships are limited. The objectives of the current study are to identify the hypotonic responsive genes in the gill cells and profile the gill microbiota communities after fresh water transfer experiment via transcriptome sequencing and 16S rRNA gene sequencing. Transcriptome sequencing identified 1,034 differentially expressed genes (DEGs), such as aquaporin and sodium potassium chloride cotransporter, after the fresh water transfer. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis further highlighted the steroid biosynthesis and glycosaminoglycan biosynthesis pathways in the gill. Moreover, the 16S rRNA gene sequencing identified

Indexed as

OryziasAnimalsFish ProteinsGillsOsmotic PressureRNA, Ribosomal, 16SFish ProteinsRNA, Ribosomal, 16Sgillhypotonic stressmedakaosmoregulationosmosensingosmotic stressRNA sequencingmetagenomics

Identifiers

PMID35285678
PMCPMC9040874
OpenAlexW4221051042

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.