Evidence map›Paper›PMID 35282619›Full record

ArticleChemical science2022

Cu(ii)-based DNA labeling identifies the structural link between transcriptional activation and termination in a metalloregulator.

Joshua Casto, Alysia Mandato, Lukas Hofmann, Idan Yakobov, Shreya Ghosh, Sharon Ruthstein, Sunil Saxena

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
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  6. Article
  7. The Copper Efflux Regulator (CueR).Sub-cellular biochemistry · 2024
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Joshua CastoDepartment of Chemistry, University of Pittsburgh Pittsburgh Pennsylvania 15260 USA sksaxena@pitt.edu.ORCID https://orcid.org/0000-0003-0696-3994
Alysia MandatoDepartment of Chemistry, University of Pittsburgh Pittsburgh Pennsylvania 15260 USA sksaxena@pitt.edu.
Lukas HofmannDepartment of Chemistry, Faculty of Exact Sciences, The Institution of Nanotechnology and Advanced Materials, Bar-Ilan University Ramat-Gan 5290002 Israel Sharon.Ruthstein@biu.ac.il.
Idan YakobovDepartment of Chemistry, Faculty of Exact Sciences, The Institution of Nanotechnology and Advanced Materials, Bar-Ilan University Ramat-Gan 5290002 Israel Sharon.Ruthstein@biu.ac.il.
Shreya GhoshDepartment of Chemistry, University of Pittsburgh Pittsburgh Pennsylvania 15260 USA sksaxena@pitt.edu.ORCID https://orcid.org/0000-0001-9884-2350
Sharon RuthsteinDepartment of Chemistry, Faculty of Exact Sciences, The Institution of Nanotechnology and Advanced Materials, Bar-Ilan University Ramat-Gan 5290002 Israel Sharon.Ruthstein@biu.ac.il.ORCID https://orcid.org/0000-0002-1741-6892
Sunil SaxenaDepartment of Chemistry, University of Pittsburgh Pittsburgh Pennsylvania 15260 USA sksaxena@pitt.edu.ORCID https://orcid.org/0000-0001-9098-6114
University of Pittsburgh · USBar-Ilan University · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the structural and mechanistic details of protein-DNA interactions that lead to cellular defence against toxic metal ions in pathogenic bacteria can lead to new ways of combating their virulence. Herein, we examine the Copper Efflux Regulator (CueR) protein, a transcription factor which interacts with DNA to generate proteins that ameliorate excess free Cu(i). We exploit site directed Cu(ii) labeling to measure the conformational changes in DNA as a function of protein and Cu(i) concentration. Unexpectedly, the EPR data indicate that the protein can bend the DNA at high protein concentrations

Identifiers

PMID35282619
PMCPMC8827015
OpenAlexW4205559031

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.