Evidence map›Paper›PMID 35280505›Full record

ArticleEvidence-based complementary and alternative medicine : eCAM2022

Biomarkers for Breast Adenocarcinoma Using In Silico Approaches.

Jhansi Pandi, Ajucarmelprecilla Arulprakasam, Ranjithkumar Dhandapani, Saikishore Ramanathan, Sathiamoorthi Thangavelu, Jayaprakash Chinnappan, V Vidhya Rajalakshmi, Saad Alghamdi, Nashwa Talaat Shesha, S Prasath

RetractedOpen access · hybridAbstract readRetracted Publication
In one paragraph

Article in Evidence-based complementary and alternative medicine : eCAM, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Retracted: Biomarkers for Breast Adenocarcinoma Using In Silico Approaches.Evidence-based complementary and alternative medicine : eCAM · 2023
    Article
4 · The record

Corrections and comments

  • Retraction · 2023-08-09Concerns/Issues about Data · Concerns/Issues about Results and/or Conclusions · Concerns/Issues about Referencing/Attributions · Concerns/Issues about Peer Review · Investigation by Journal/Publisher · Investigation by Third Party · Paper Mill · Computer-Aided Content or Computer-Generated Content · Unreliable Results and/or Conclusions · · See also: https://pubpeer.com/publications/6CFA81482BD837A305B0AEC142A841
  • Retracted
5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Jhansi PandiMedical Microbiology Unit, Department of Microbiology, Alagappa University, Karaikudi, Tamil Nadu, India.
Ajucarmelprecilla ArulprakasamMedical Microbiology Unit, Department of Microbiology, Alagappa University, Karaikudi, Tamil Nadu, India.ORCID https://orcid.org/0000-0002-6198-6235
Ranjithkumar DhandapaniChimertech Private Limited, Chennai, India.ORCID https://orcid.org/0000-0003-0472-8077
Saikishore RamanathanMedical Microbiology Unit, Department of Microbiology, Alagappa University, Karaikudi, Tamil Nadu, India.
Sathiamoorthi ThangaveluMedical Microbiology Unit, Department of Microbiology, Alagappa University, Karaikudi, Tamil Nadu, India.
Jayaprakash ChinnappanDepartment of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India.
V Vidhya RajalakshmiDepartment of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India.
Saad AlghamdiLaboratory Medicine Department, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Saudi Arabia.ORCID https://orcid.org/0000-0003-4532-9128
Nashwa Talaat SheshaHera General Hospital, Directorate of Health Affairs, Makkah, Saudi Arabia.
S PrasathDepartment of Mechanical Engineering, College of Engineering and Technology, Mizan Tepi University, Ethiopia.ORCID https://orcid.org/0000-0002-8191-9750
Alagappa University · INBharathiar University · INHera General Hospital · SAMizan Tepi University · ETUmm al-Qura University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This work elucidates the idea of finding probable critical genes linked to breast adenocarcinoma. In this study, the GEO database gene expression profile data set (GSE70951) was retrieved to look for genes that were expressed variably across breast adenocarcinoma samples and healthy tissue samples. The genes were confirmed to be part of the PPI network for breast cancer pathogenesis and prognosis. In Cytoscape, the CytoHubba module was used to discover the hub genes. For correlation analysis, the predictive biomarker of these hub genes, as well as GEPIA, was used. A total of 155 (85 upregulated genes and 70 downregulated genes) were identified. By integrating the PPI and CytoHubba data, the major key/hub genes were selected from the results. The KM plotter is employed to find the prognosis of those major pivot genes, and the outcome shows worse prognosis in breast adenocarcinoma patients. Further experimental validation will show the predicted expression levels of those hub genes. The overall result of our study gives the consequences for the identification of a critical gene to ease the molecular targeting therapy for breast adenocarcinoma. It could be used as a prognostic biomarker and could lead to therapy options for breast adenocarcinoma.

Identifiers

PMID35280505
PMCPMC8913068
OpenAlexW4214903538

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.