Evidence map›Paper›PMID 35279850›Full record

ArticleJournal of inherited metabolic disease2022

Synergistic use of glycomics and single-molecule molecular inversion probes for identification of congenital disorders of glycosylation type-1.

Nurulamin Abu Bakar, Angel Ashikov, Jaime Moritz Brum, Roel Smeets, Marjan Kersten, Karin Huijben, Wee Teik Keng, Carlos Eduardo Speck-Martins, Daniel Rocha de Carvalho, Isabela Maria Pinto Oliveira de Rizzo and 13 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of inherited metabolic disease, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 9 institutions in 8 countries.

Nurulamin Abu BakarDepartment of Neurology, Translational Metabolic Laboratory, Donders Institute for Brain, Cognition, and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID 0000-0001-6818-7973
Angel AshikovDepartment of Neurology, Translational Metabolic Laboratory, Donders Institute for Brain, Cognition, and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID 0000-0001-9679-7955
Jaime Moritz BrumDepartment of Clinical Pathology, The Sarah Network of Rehabilitation Hospitals, Brasilia, Brazil.
Roel SmeetsTranslational Metabolic Laboratory, Department Laboratory Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.
Marjan KerstenTranslational Metabolic Laboratory, Department Laboratory Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.
Karin HuijbenTranslational Metabolic Laboratory, Department Laboratory Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.
Wee Teik KengGenetics Department, Kuala Lumpur Hospital, Kuala Lumpur, Ministry of Health Malaysia, Putrajaya, Malaysia.
Carlos Eduardo Speck-MartinsGenetic Unit, Sarah Network of Hospitals, Brasilia, Brazil.
Daniel Rocha de CarvalhoGenetic Unit, Sarah Network of Hospitals, Brasilia, Brazil.
Isabela Maria Pinto Oliveira de RizzoGenetic Unit, Sarah Network of Hospitals, Brasilia, Brazil.
Walquiria Domingues de MelloGenetic Unit, Sarah Network of Hospitals, Brasilia, Brazil.
Rebecca Heiner-FokkemaDepartment of Laboratory Medicine, UMC Groningen, Groningen, The Netherlands.
Kathleen GormanPediatric Neurology, Children's Health Ireland (CHI), Dublin, Ireland.
Stephanie GrunewaldMetabolic Department, Great Ormond Street Hospital NHS Foundation Trust Institute of Child Health, University College London, London, UK.
Helen MichelakakisDepartment of Enzymology and Cellular Function, Institute of Child Health, Athens, Greece.
Marina MoraitouDepartment of Enzymology and Cellular Function, Institute of Child Health, Athens, Greece.
Diego MartinelliGenetics and Rare Diseases Research Division, Bambino Gesù Children's Research Hospital, Rome, Italy.
Monique van ScherpenzeelDepartment of Neurology, Translational Metabolic Laboratory, Donders Institute for Brain, Cognition, and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands.
Mirian JanssenDepartment of Internal Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.
Lonneke de BoerDepartment of Pediatrics, Radboud University Medical Center, Nijmegen, The Netherlands.
Lambertus P van den HeuvelDepartment of Pediatrics, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, The Netherlands.
Christian ThielCenter for Child and Adolescent Medicine, Kinderheilkunde I, University of Heidelberg, Heidelberg, Germany.
Dirk J LefeberDepartment of Neurology, Translational Metabolic Laboratory, Donders Institute for Brain, Cognition, and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID 0000-0001-7770-8398
Radboud University Nijmegen · NLSarah Network of Rehabilitation Hospitals · BRInstitute of Child Health · GRMinistry of Health · MYBambino Gesù Children's Hospital · ITChildren's Health Ireland at Crumlin · IEGreat Ormond Street Hospital for Children NHS Foundation Trust · GBHeidelberg University · DEUniversity Medical Center Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Congenital disorders of glycosylation type 1 (CDG-I) comprise a group of 27 genetic defects with heterogeneous multisystem phenotype, mostly presenting with nonspecific neurological symptoms. The biochemical hallmark of CDG-I is a partial absence of complete N-glycans on transferrin. However, recent findings of a diagnostic N-tetrasaccharide for ALG1-CDG and increased high-mannose N-glycans for a few other CDG suggested the potential of glycan structural analysis for CDG-I gene discovery. We analyzed the relative abundance of total plasma N-glycans by high resolution quadrupole time-of-flight mass spectrometry in a large cohort of 111 CDG-I patients with known (n = 75) or unsolved (n = 36) genetic cause. We designed single-molecule molecular inversion probes (smMIPs) for sequencing of CDG-I candidate genes on the basis of specific N-glycan signatures. Glycomics profiling in patients with known defects revealed novel features such as the N-tetrasaccharide in ALG2-CDG patients and a novel fucosylated N-pentasaccharide as specific glycomarker for ALG1-CDG. Moreover, group-specific high-mannose N-glycan signatures were found in ALG3-, ALG9-, ALG11-, ALG12-, RFT1-, SRD5A3-, DOLK-, DPM1-, DPM3-, MPDU1-, ALG13-CDG, and hereditary fructose intolerance. Further differential analysis revealed high-mannose profiles, characteristic for ALG12- and ALG9-CDG. Prediction of candidate genes by glycomics profiling in 36 patients with thus far unsolved CDG-I and subsequent smMIPs sequencing led to a yield of solved cases of 78% (28/36). Combined plasma glycomics profiling and targeted smMIPs sequencing of candidate genes is a powerful approach to identify causative mutations in CDG-I patient cohorts.

Indexed as

Congenital Disorders of GlycosylationGlycomicsGlycosylationHumansMannoseMannosyltransferasesN-AcetylglucosaminyltransferasesOligosaccharidesPolysaccharidesALG11 protein, humanALG13 protein, humanALG3 protein, humanMannoseMannosyltransferasesN-AcetylglucosaminyltransferasesOligosaccharidesPolysaccharidesCDG type 1 (CDG-I)congenital disorders of glycosylation (CDG)diagnostics by mass spectrometryglycomicsmulti-omicssmMIPs

Identifiers

PMID35279850
PMCPMC9545396
OpenAlexW4220715483

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.