Evidence map›Paper›PMID 35279697›Full record

ArticleScientific reports2022

Transcriptome and metabolome analyses revealed that narrowband 280 and 310 nm UV-B induce distinctive responses in Arabidopsis.

Tomohiro Tsurumoto, Yasuo Fujikawa, Yushi Onoda, Yukari Ochi, Daisaku Ohta, Atsushi Okazawa

Open access · goldAbstract read
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Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tomohiro TsurumotoGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, 599-8531, Japan.
Yasuo FujikawaYokohama Research Center, Nichia Corporation, Yokohama, 221-0022, Japan.
Yushi OnodaYokohama Research Center, Nichia Corporation, Yokohama, 221-0022, Japan.
Yukari OchiGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, 599-8531, Japan.
Daisaku OhtaGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, 599-8531, Japan.
Atsushi OkazawaGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, 599-8531, Japan. okazawa@plant.osakafu-u.ac.jp.
Osaka Prefecture University · JPNichia Corporation (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants, the UV-B photoreceptor UV RESISTANCE LOCUS8 (UVR8) perceives UV-B and induces UV-B responses. UVR8 absorbs a range of UV-B (260-335 nm). However, the responsiveness of plants to each UV-B wavelength has not been intensively studied so far. Here, we performed transcriptome and metabolome analyses of Arabidopsis using UV light emitting diodes (LEDs) with peak wavelengths of 280 and 310 nm to investigate the differences in the wavelength-specific UV-B responses. Irradiation with both UV-LEDs induced gene expression of the transcription factor ELONGATED HYPOCOTYL 5 (HY5), which has a central role in the UVR8 signaling pathway. However, the overall transcriptomic and metabolic responses to 280 and 310 nm UV-LED irradiation were different. Most of the known UV-B-responsive genes, such as defense-related genes, responded only to 280 nm UV-LED irradiation. Lipids, polyamines and organic acids were the metabolites most affected by 280 nm UV-LED irradiation, whereas the effect of 310 nm UV-LED irradiation on the metabolome was considerably less. Enzymatic genes involved in the phenylpropanoid pathway upstream in anthocyanin biosynthesis were up-regulated only by 280 nm UV-LED irradiation. These results revealed that the responsivenesses of Arabidopsis to 280 and 310 nm UV-B were significantly different, suggesting that UV-B signaling is mediated by more complex pathways than the current model.

Indexed as

ArabidopsisArabidopsis ProteinsChromosomal Proteins, Non-HistoneGene Expression Regulation, PlantMetabolomeTranscriptomeUltraviolet RaysArabidopsis ProteinsChromosomal Proteins, Non-HistoneUvr8 protein, Arabidopsis

Identifiers

PMID35279697
PMCPMC8918342
OpenAlexW4220805751

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.