Evidence map›Paper›PMID 35278581›Full record

ArticleAntiviral research2022

A highly sensitive cell-based luciferase assay for high-throughput automated screening of SARS-CoV-2 nsp5/3CLpro inhibitors.

K Y Chen, T Krischuns, L Ortega Varga, E Harigua-Souiai, S Paisant, A Zettor, J Chiaravalli, A Delpal, D Courtney, A O'Brien and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Antiviral research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  11. Approved drugs successfully repurposed againstFrontiers in cellular and infection microbiology · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 3 countries.

K Y ChenInstitut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Biologie des ARN et Virus Influenza, F-75015 Paris, France.
T KrischunsInstitut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Biologie des ARN et Virus Influenza, F-75015 Paris, France.
L Ortega VargaInstitut Pasteur, Université Paris Cité, CNRS UMR3528, Unité de Bioinformatique Structurale, F-75015 Paris, France.
E Harigua-SouiaiLaboratory of Molecular Epidemiology and Experimental Pathology - LR16IPT04, Institut Pasteur de Tunis, Université de Tunis El Manar, Tunis, Tunisia.
S PaisantInstitut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Biologie des ARN et Virus Influenza, F-75015 Paris, France.
A ZettorInstitut Pasteur, Université Paris Cité, CNRS UMR3523, Plateforme de Criblage Chémogénomique et Biologique, F-75015 Paris, France.
J ChiaravalliInstitut Pasteur, Université Paris Cité, CNRS UMR3523, Plateforme de Criblage Chémogénomique et Biologique, F-75015 Paris, France.
A DelpalArchitecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, CNRS UMR7257, F-13009 Marseille, France.
D CourtneyInstitut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Biologie des ARN et Virus Influenza, F-75015 Paris, France.
A O'BrienDepartment of Microbiology and Immunology, Loyola University Chicago, Stritch School of Medicine, Maywood, IL, USA.
S C BakerDepartment of Microbiology and Immunology, Loyola University Chicago, Stritch School of Medicine, Maywood, IL, USA.
E DecrolyArchitecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, CNRS UMR7257, F-13009 Marseille, France.
C IselInstitut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Biologie des ARN et Virus Influenza, F-75015 Paris, France.
F AgouInstitut Pasteur, Université Paris Cité, CNRS UMR3523, Plateforme de Criblage Chémogénomique et Biologique, F-75015 Paris, France.
Y JacobInstitut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Génétique Moléculaire des Virus à ARN, F-75015 Paris, France.
A BlondelInstitut Pasteur, Université Paris Cité, CNRS UMR3528, Unité de Bioinformatique Structurale, F-75015 Paris, France.
N NaffakhInstitut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Biologie des ARN et Virus Influenza, F-75015 Paris, France. Electronic address: nadia.naffakh@pasteur.fr.
Centre National de la Recherche Scientifique · FRLoyola University Chicago · USTunis University · TN

Funding

Mechanisms of viral proteases in coronavirus replication and pathogenesisR01AI085089 · NIAID · LOYOLA UNIVERSITY CHICAGO · PI BAKER, SUSAN C., MESECAR, ANDREW D · 2010 to 2019
$6.8M
Investigating Interferon Antagonists in Delaying Innate Immune Responses to SARS-CoV-2R01AI159945 · NIAID · LOYOLA UNIVERSITY CHICAGO · PI BAKER, SUSAN C. · 2021 to 2025
$4.0M
NIAID NIH HHS R01 AI085089NIAID NIH HHS R01 AI159945
6 · The paper itself

Abstract

Effective drugs against SARS-CoV-2 are urgently needed to treat severe cases of infection and for prophylactic use. The main viral protease (nsp5 or 3CLpro) represents an attractive and possibly broad-spectrum target for drug development as it is essential to the virus life cycle and highly conserved among betacoronaviruses. Sensitive and efficient high-throughput screening methods are key for drug discovery. Here we report the development of a gain-of-signal, highly sensitive cell-based luciferase assay to monitor SARS-CoV-2 nsp5 activity and show that it is suitable for the screening of compounds in a 384-well format. A benefit of miniaturisation and automation is that screening can be performed in parallel on a wild-type and a catalytically inactive nsp5, which improves the selectivity of the assay. We performed molecular docking-based screening on a set of 14,468 compounds from an in-house chemical database, selected 359 candidate nsp5 inhibitors and tested them experimentally. We identified two molecules which show anti-nsp5 activity, both in our cell-based assay and in vitro on purified nsp5 protein, and inhibit SARS-CoV-2 replication in A549-ACE2 cells with EC

Indexed as

COVID-19 Drug TreatmentSARS-CoV-2Antiviral AgentsHumansLuciferasesMolecular Docking SimulationPeptide HydrolasesProtease InhibitorsViral ProteasesAntiviral AgentsLuciferasesPeptide HydrolasesProtease InhibitorsViral Proteases3CLproCell-based assayHigh-throughput screeningnsp5SARS-CoV-2Small molecule inhibitors

Identifiers

PMID35278581
PMCPMC8906008
OpenAlexW4220714714

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.