Evidence map›Paper›PMID 35273390›Full record

ArticleNature structural & molecular biology2022

Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.

Alena Stsiapanava, Chenrui Xu, Shunsuke Nishio, Ling Han, Nao Yamakawa, Marta Carroni, Kathryn Tunyasuvunakool, John Jumper, Daniele de Sanctis, Bin Wu and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Uromodulin and the study of urinary extracellular vesicles.Journal of extracellular biology · 2024
    Review
  7. Article
  8. Review
  9. Uromodulin biology.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2024
    Review
  10. Review
  11. Article
  12. AlphaFold2 and its applications in the fields of biology and medicine.Signal transduction and targeted therapy · 2023
    Review
  13. Accelerating crystal structure determination with iterative AlphaFold prediction.Acta crystallographica. Section D, Structural biology · 2023
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 4 countries.

Alena StsiapanavaDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
Chenrui XuSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Shunsuke NishioDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.ORCID http://orcid.org/0000-0003-3420-2578
Ling HanDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.ORCID http://orcid.org/0000-0001-9310-4789
Nao YamakawaUS 41-UMS 2014-PLBS, Université de Lille, CNRS, INSERM, CHU Lille, Institut Pasteur de Lille, Lille, France.
Marta CarroniDepartment of Biochemistry and Biophysics, Science for Life Laboratory, Stockholm University, Stockholm, Sweden.
Kathryn TunyasuvunakoolDeepMind, London, UK.
John JumperDeepMind, London, UK.ORCID http://orcid.org/0000-0001-6169-6580
Daniele de SanctisESRF - The European Synchrotron, Grenoble, France.ORCID http://orcid.org/0000-0003-0391-8290
Bin WuSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.ORCID http://orcid.org/0000-0002-0883-8006
Luca JovineDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden. luca.jovine@ki.se.ORCID http://orcid.org/0000-0002-2679-6946
Karolinska Institutet · SENanyang Technological University · SGGoogle DeepMind (United Kingdom) · GBCentre National de la Recherche Scientifique · FREuropean Synchrotron Radiation Facility · FRStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycoprotein 2 (GP2) and uromodulin (UMOD) filaments protect against gastrointestinal and urinary tract infections by acting as decoys for bacterial fimbrial lectin FimH. By combining AlphaFold2 predictions with X-ray crystallography and cryo-EM, we show that these proteins contain a bipartite decoy module whose new fold presents the high-mannose glycan recognized by FimH. The structure rationalizes UMOD mutations associated with kidney diseases and visualizes a key epitope implicated in cast nephropathy.

Indexed as

Adhesins, BacterialFimbriae, BacterialCrystallography, X-RayFimbriae ProteinsGPI-Linked ProteinsHumansMannoseUromodulinAdhesins, BacterialFimbriae ProteinsGP2 protein, humanGPI-Linked ProteinsMannoseUMOD protein, humanUromodulin

Identifiers

PMID35273390
PMCPMC8930769
OpenAlexW4221068086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.