Evidence map›Paper›PMID 35273076›Full record

ArticleGenes & development2022

NDF is a transcription factor that stimulates elongation by RNA polymerase II.

Jia Fei, Jun Xu, Ziwei Li, Kevin Xu, Dong Wang, George A Kassavetis, James T Kadonaga

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The regulation of transcription elongation in embryonic stem cells.Frontiers in cell and developmental biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Jia FeiDepartment of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey 08854, USA.
Jun XuDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, Department of Cellular and Molecular Medicine, School of Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Ziwei LiDepartment of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey 08854, USA.
Kevin XuDepartment of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey 08854, USA.
Dong WangDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, Department of Cellular and Molecular Medicine, School of Medicine, University of California at San Diego, La Jolla, California 92093, USA.
George A KassavetisSection of Molecular Biology, University of California at San Diego, La Jolla, California 92093, USA.
James T KadonagaSection of Molecular Biology, University of California at San Diego, La Jolla, California 92093, USA.ORCID 0000-0002-2075-9458
Rutgers, The State University of New Jersey · USUniversity of California San Diego · USUniversity of Montana · US

Funding

Mechanisms of Eukaryotic Gene RegulationR35GM118060 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI James T. Kadonaga · 2016 to 2026
$7.5M
Molecular Mechanisms for DNA Damage Processing by Transcription MachineryR01GM102362 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, DONG · 2013 to 2025
$5.6M
NIGMS NIH HHS R01 GM102362NIGMS NIH HHS R35 GM118060
6 · The paper itself

Abstract

RNA polymerase II (Pol II) elongation is a critical step in gene expression. Here we found that NDF, which was identified as a bilaterian nucleosome-destabilizing factor, is also a Pol II transcription factor that stimulates elongation with plain DNA templates in the absence of nucleosomes. NDF binds directly to Pol II and enhances elongation by a different mechanism than that used by transcription factor TFIIS. Moreover, yeast Pdp3, which is related to NDF, binds to Pol II and stimulates elongation. Thus, NDF is a Pol II binding transcription elongation factor that is localized over gene bodies and is conserved from yeast to humans.

Indexed as

RNA Polymerase IITranscription FactorsHumansNucleosomesSaccharomyces cerevisiaeTranscriptional Elongation FactorsTranscription, GeneticNucleosomesRNA Polymerase IITranscriptional Elongation FactorsTranscription Factorselongationgene expressionNDFRNA polymerase IITFIIStranscription

Identifiers

PMID35273076
PMCPMC8973848
OpenAlexW4220942112

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.