Evidence map›Paper›PMID 35271311›Full record

ArticleScience (New York, N.Y.)2022

OpenCell: Endogenous tagging for the cartography of human cellular organization.

Nathan H Cho, Keith C Cheveralls, Andreas-David Brunner, Kibeom Kim, André C Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y Li, Hera Canaj and 17 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 397 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
397citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

397 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. A complex of MAST1 and 14-3-3η regulates Tau phosphorylation in the developing cortex.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Human Hsp70 paralogs display selective J-domain interactions tuning proteostasis under stress.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  17. Article
  18. Review
  19. Article
  20. Article

337 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors.

Nathan H Cho *Chan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-0110-1343
Keith C Cheveralls *Chan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-4157-6087
Andreas-David Brunner *Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID 0000-0002-2733-7899
Kibeom Kim *Chan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-0764-4875
André C Michaelis *Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID 0000-0002-7519-3295
Preethi Raghavan *Chan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0003-4340-3777
Hirofumi KobayashiChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-4505-2061
Laura SavyChan Zuckerberg Biohub, San Francisco, CA, USA.
Jason Y LiChan Zuckerberg Biohub, San Francisco, CA, USA.
Hera CanajChan Zuckerberg Biohub, San Francisco, CA, USA.
James Y S KimChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-6127-7850
Edna M StewartChan Zuckerberg Biohub, San Francisco, CA, USA.
Christian GnannChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0001-6566-3559
Frank McCarthyChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-7933-6847
Joana P CabreraChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0001-5100-4560
Rachel M BrunettiDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID 0000-0003-4821-3788
Bryant B ChhunChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-3539-2396
Greg DingleChan Zuckerberg Initiative, Redwood City, CA, USA.ORCID 0000-0003-3269-3078
Marco Y HeinChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-9490-2261
Bo HuangChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0003-1704-4141
Shalin B MehtaChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-2542-3582
Jonathan S WeissmanWhitehead Institute, Koch Institute, Howard Hughes Medical Institute, and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0003-2445-670X
Rafael Gómez-SjöbergChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0001-8017-9669
Daniel N ItzhakChan Zuckerberg Biohub, San Francisco, CA, USA.
Loïc A RoyerChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-9991-9724
Matthias MannProteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID 0000-0003-1292-4799
Manuel D LeonettiChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-4881-405X

Funding

Center for Genomic Editing and Recording: Development and Application of Next-Generation Genome and Epigenome Editing Methods to Advance the Study and Treatment of Human DiseaseRM1HG009490 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI Brittany S. Adamson, Martin Joseph Ankrah Aryee · 2017 to 2026
$22.7M
Mapping endogenous protein dynamics in living cellsR01GM131641 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Bo Huang · 2019 to 2026
$2.6M
How do nucleation promoting factors build different actin networks?F31HL143882 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BRUNETTI, RACHEL MARIE · 2018 to 2020
$111k
Howard Hughes Medical InstituteNHGRI NIH HHS RM1 HG009490NHLBI NIH HHS F31 HL143882NIGMS NIH HHS R01 GM131641
6 · The paper itself

Abstract

Elucidating the wiring diagram of the human cell is a central goal of the postgenomic era. We combined genome engineering, confocal live-cell imaging, mass spectrometry, and data science to systematically map the localization and interactions of human proteins. Our approach provides a data-driven description of the molecular and spatial networks that organize the proteome. Unsupervised clustering of these networks delineates functional communities that facilitate biological discovery. We found that remarkably precise functional information can be derived from protein localization patterns, which often contain enough information to identify molecular interactions, and that RNA binding proteins form a specific subgroup defined by unique interaction and localization properties. Paired with a fully interactive website (opencell.czbiohub.org), our work constitutes a resource for the quantitative cartography of human cellular organization.

Indexed as

Protein Interaction MappingCluster AnalysisCRISPR-Cas SystemsDatasets as TopicFluorescent DyesHEK293 CellsHumansImmunoprecipitationMachine LearningMass SpectrometryMicroscopy, ConfocalProteinsProteomeProteomicsRNA-Binding ProteinsSpatial AnalysisFluorescent DyesProteinsProteomeRNA-Binding Proteins

Identifiers

PMID35271311
PMCPMC9119736

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.