Evidence map›Paper›PMID 35268757›Full record

ArticleMolecules (Basel, Switzerland)2022

A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters.

Raúl Rodríguez-Segundo, Daniel J Arismendi-Arrieta, Rita Prosmiti

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Raúl Rodríguez-SegundoInstitute of Fundamental Physics (IFF-CSIC), Consejo Superior de Investigaciones Científicas, Serrano 123, 28006 Madrid, Spain.
Daniel J Arismendi-ArrietaDepartment of Chemistry, Ångström Laboratory, Uppsala University, P.O. Box 538, 75121 Uppsala, Sweden.ORCID 0000-0002-4917-2466
Rita ProsmitiInstitute of Fundamental Physics (IFF-CSIC), Consejo Superior de Investigaciones Científicas, Serrano 123, 28006 Madrid, Spain.ORCID 0000-0002-1557-1549

Funding

Comunidad de Madrid, Spain IND2017/AMB-7696European Cooperation in Science and Technology Cost action: CA18212(MD-GAS)Ministerio de ciencia e innovacion, Spain PID2020-114654GD-I00Ministry of Economy, Industry and Competitiveness FIS2017-83157-P
6 · The paper itself

Abstract

Dissolved ions in aqueous media are ubiquitous in many physicochemical processes, with a direct impact on research fields, such as chemistry, climate, biology, and industry. Ions play a crucial role in the structure of the surrounding network of water molecules as they can either weaken or strengthen it. Gaining a thorough understanding of the underlying forces from small clusters to bulk solutions is still challenging, which motivates further investigations. Through a systematic analysis of the interaction energies obtained from high-level electronic structure methodologies, we assessed various dispersion-corrected density functional approaches, as well as ab initio-based data-driven potential models for halide ion-water clusters. We introduced an active learning scheme to automate the generation of optimally weighted datasets, required for the development of efficient bottom-up anion-water models. Using an evolutionary programming procedure, we determined optimized and reference configurations for such polarizable and first-principles-based representation of the potentials, and we analyzed their structural characteristics and energetics in comparison with estimates from DF-MP2 and DFT+D quantum chemistry computations. Moreover, we presented new benchmark datasets, considering both equilibrium and non-equilibrium configurations of higher-order species with an increasing number of water molecules up to 54 for each F, Cl, Br, and I anions, and we proposed a validation protocol to cross-check methods and approaches. In this way, we aim to improve the predictive ability of future molecular computer simulations for determining the ongoing conflicting distribution of different ions in aqueous environments, as well as the transition from nanoscale clusters to macroscopic condensed phases.

Indexed as

benchmark protocoldata-driven modelingelectronic structure calculationsgenetic algorithmions hydrationmolecular interactions

Identifiers

PMID35268757
PMCPMC8924895

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.