Evidence map›Paper›PMID 35266814›Full record

ArticlemBio2022

The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut.

Erin Oi-Yan Wong, Emma Joan Elizabeth Brownlie, Katharine Michelle Ng, Sornnujah Kathirgamanathan, Feiqiao Brian Yu, Bryan D Merrill, Kerwyn Casey Huang, Alberto Martin, Carolina Tropini, William Wiley Navarre

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Impact of a GABA-ProducingFASEB bioAdvances · 2026
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  11. BlackFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Erin Oi-Yan WongDepartment of Molecular Genetics, University of Torontogrid.17063.33, Toronto, Ontario, Canada.
Emma Joan Elizabeth BrownlieDepartment of Molecular Genetics, University of Torontogrid.17063.33, Toronto, Ontario, Canada.
Katharine Michelle NgSchool of Biomedical Engineering, University of British Columbiagrid.17091.3e, Vancouver, Canada.
Sornnujah KathirgamanathanDepartment of Molecular Genetics, University of Torontogrid.17063.33, Toronto, Ontario, Canada.
Feiqiao Brian YuChan Zuckerberg Biohub, San Francisco, California, USA.ORCID 0000-0003-3416-3046
Bryan D MerrillDepartment of Microbiology and Immunology, Stanford Universitygrid.168010.e of School of Medicine, Stanford, California, USA.ORCID 0000-0002-9967-5539
Kerwyn Casey HuangChan Zuckerberg Biohub, San Francisco, California, USA.ORCID 0000-0002-8043-8138
Alberto MartinDepartment of Immunology, University of Torontogrid.17063.33, Toronto, Ontario, Canada.
Carolina TropiniSchool of Biomedical Engineering, University of British Columbiagrid.17091.3e, Vancouver, Canada.ORCID 0000-0002-7542-1577
William Wiley NavarreDepartment of Molecular Genetics, University of Torontogrid.17063.33, Toronto, Ontario, Canada.ORCID 0000-0002-9293-9220
University of Toronto · CAChan Zuckerberg Initiative (United States) · USCanadian Institute for Advanced Research · CAStanford University · USUniversity of British Columbia · CA

Funding

A universal pipeline for functional characterization of the human microbiota at a massive scaleRM1GM135102 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BUIE, CULLEN RICHARD, DEUTSCHBAUER, ADAM M · 2020 to 2024
$7.6M
Antimicrobial Resistance and Horizontal Gene Transfer in the Human Gut Microbiome in Response to an AntibioticR01AI147023 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI RELMAN, DAVID A. · 2020 to 2024
$3.5M
Antimicrobial Resistance and Horizontal Gene Transfer in the Human Gut Microbiome in Response to an AntibioticR56AI147023 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI RELMAN, DAVID A. · 2019 to 2019
$713k
NIAID NIH HHS R01 AI147023NIAID NIH HHS R56 AI147023NIGMS NIH HHS RM1 GM135102
6 · The paper itself

Abstract

Gut inflammation directly impacts the growth and stability of commensal gut microbes and can lead to long-lasting changes in microbiota composition that can prolong or exacerbate disease states. While mouse models are used extensively to investigate the interplay between microbes and the inflamed state, the paucity of cultured mouse gut microbes has hindered efforts to determine causal relationships. To address this issue, we are assembling the Collection of Inflammation-Associated Mouse Intestinal Bacteria (CIAMIB). The initial release of this collection comprises 41 isolates of 39 unique bacterial species, covering 4 phyla and containing 10 previously uncultivated isolates, including 1 novel family and 7 novel genera. The collection significantly expands the number of available Muribaculaceae, Lachnospiraceae, and Coriobacteriaceae isolates and includes microbes from genera associated with inflammation, such as

Indexed as

Gastrointestinal MicrobiomeMicrobiotaAnimalsBacteriaInflammationMiceSymbiosisAdlercreutziaAtopobiaceaegut inflammationLachnospiraceaemicrobial growthmicrobiotaMuribaculaceaePrevotella

Identifiers

PMID35266814
PMCPMC9040815
OpenAlexW4220663454

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.