Evidence map›Paper›PMID 35264613›Full record

SynthesisScientific reports2022

Genomic evolution and adaptation of arthropod-associated Rickettsia.

Khalid El Karkouri, Eric Ghigo, Didier Raoult, Pierre-Edouard Fournier

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Pangenomic and genomic plasticity analyses of the genus Rickettsia.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Rickettsia spp. in finnish ixodid ticks.Parasites & vectors · 2025
    Article
  13. Article
  14. Article
  15. Review
  16. Spatial Distribution of Equid Exposure toPathogens (Basel, Switzerland) · 2025
    Article
  17. Article
  18. ThemBio · 2025
    Article
  19. Investigation of potentially zoonoticScience in One Health · 2025
    Article
  20. Molecular detection and characterization ofInfection ecology & epidemiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Khalid El KarkouriAix-Marseille University, IRD, AP-HM, SSA, VITROME, Marseille, France. khalid.elkarkouri@univ-amu.fr.
Eric GhigoIHU Méditerranée Infection, Marseille, France.
Didier RaoultIHU Méditerranée Infection, Marseille, France.
Pierre-Edouard FournierAix-Marseille University, IRD, AP-HM, SSA, VITROME, Marseille, France. pierre-edouard.fournier@univ-amu.fr.
Méditerranée Infection Foundation · FRAix-Marseille Université · FRInstitut de Recherche pour le Développement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rickettsia species are endosymbionts hosted by arthropods and are known to cause mild to fatal diseases in humans. Here, we analyse the evolution and diversity of 34 Rickettsia species using a pangenomic meta-analysis (80 genomes/41 plasmids). Phylogenomic trees showed that Rickettsia spp. diverged into two Spotted Fever groups, a Typhus group, a Canadensis group and a Bellii group, and may have inherited their plasmids from an ancestral plasmid that persisted in some strains or may have been lost by others. The results suggested that the ancestors of Rickettsia spp. might have infected Acari and/or Insecta and probably diverged by persisting inside and/or switching hosts. Pangenomic analysis revealed that the Rickettsia genus evolved through a strong interplay between genome degradation/reduction and/or expansion leading to possible distinct adaptive trajectories. The genus mainly shared evolutionary relationships with α-proteobacteria, and also with γ/β/δ-proteobacteria, cytophagia, actinobacteria, cyanobacteria, chlamydiia and viruses, suggesting lateral exchanges of several critical genes. These evolutionary processes have probably been orchestrated by an abundance of mobile genetic elements, especially in the Spotted Fever and Bellii groups. In this study, we provided a global evolutionary genomic view of the intracellular Rickettsia that may help our understanding of their diversity, adaptation and fitness.

Indexed as

ArthropodsGammaproteobacteriaRickettsiaSpotted Fever Group RickettsiosisAnimalsEvolution, MolecularGenomicsPhylogeny

Identifiers

PMID35264613
PMCPMC8907221
OpenAlexW4220660613

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.