Evidence map›Paper›PMID 35264242›Full record

ArticleActa neuropathologica communications2022

Global DNA methylation profiling reveals chromosomal instability in IDH-mutant astrocytomas.

Yan Liu, Adwait Amod Sathe, Kalil G Abdullah, Samuel K McBrayer, Steven H Adams, Andrew J Brenner, Kimmo J Hatanpaa, Mariano S Viapiano, Chao Xing, Jamie M Walker and 1 more

Open access · goldAbstract read
In one paragraph

Article in Acta neuropathologica communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Assessment of the Type and Degree of Genomic Instability in Gliomas.International journal of molecular sciences · 2026
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  8. Chromosomal instability in adult-type diffuse gliomas.Acta neuropathologica communications · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Yan Liu *Eugene McDermott Center for Human Growth & Development, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Adwait Amod Sathe *Eugene McDermott Center for Human Growth & Development, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Kalil G AbdullahDepartment of Neurosurgery, University of Pittsburgh School of Medicine, 200 Lothrop St, Pittsburgh, PA, 15213, USA.
Samuel K McBrayerSimmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Steven H AdamsDepartment of Pathology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA.
Andrew J BrennerDepartment of Internal Medicine, Division of Hematology & Oncology, University of Texas Health San Antonio, San Antonio, TX, 78229, USA.
Kimmo J HatanpaaDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Mariano S ViapianoDepartment of Neuroscience and Physiology, State University of New York, Upstate Medical University, Syracuse, NY, 13210, USA.
Chao XingEugene McDermott Center for Human Growth & Development, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Jamie M WalkerDepartment of Pathology and Laboratory Medicine, Glenn Biggs Institute for Alzheimer's & Neurodegenerative Disease, University of Texas Health San Antonio, 7703 Floyd Curl Dr., MC 8070, San Antonio, TX, 78229, USA.
Timothy E RichardsonDepartment of Pathology and Laboratory Medicine, Glenn Biggs Institute for Alzheimer's & Neurodegenerative Disease, University of Texas Health San Antonio, 7703 Floyd Curl Dr., MC 8070, San Antonio, TX, 78229, USA. richardsont2@uthscsa.edu.
The University of Texas Southwestern Medical Center · USThe University of Texas Health Science Center at San Antonio · USChildren's Medical Center · USStony Brook University Hospital · USSUNY Upstate Medical University · USUniversity of Pittsburgh · US

Funding

South Texas Alzheimer's Disease Research CenterP30AG066546 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Mohamad Habes · 2021 to 2026
$24.0M
NIA NIH HHS P30 AG066546
6 · The paper itself

Abstract

Diffusely infiltrating gliomas are among the most common central nervous system tumors in adults. Over the past decade, the subcategorization of these tumors has changed to include both traditional histologic features and more recently identified molecular factors. However, one molecular feature that has yet to be integrated is the presence/absence of chromosomal instability (CIN). Herein, we use global methylation profiling to evaluate a reference cohort of IDH-mutant astrocytomas with and without prior evidence of CIN (n = 42), and apply the resulting methylation-based characteristics to a larger test cohort of publicly-available IDH-mutant astrocytomas (n = 245). We demonstrate that IDH-mutant astrocytomas with evidence of CIN cluster separately from their chromosomally-stable counterparts. CIN cases were associated with higher initial histologic grade, altered expression patterns of genes related to CIN in other cancers, elevated initial total copy number burden, and significantly worse progression-free and overall survival. In addition, in a grade-for-grade analysis, patients with CIN-positive WHO grade 2 and 3 tumors had significantly worse survival. These results suggest that global methylation profiling can be used to discriminate between chromosomally stable and unstable IDH-mutant astrocytomas, and may therefore provide a reliable and cost-effective method for identifying gliomas with chromosomal instability and resultant poor clinical outcome.

Indexed as

AstrocytomaBrain NeoplasmsGliomaAdultChromosomal InstabilityDNA MethylationHumansIsocitrate DehydrogenaseMutationIsocitrate DehydrogenaseAstrocytomaChromosomal instabilityCopy number variationGlioblastomaGliomaIDH-mutationMethylation profiling

Identifiers

PMID35264242
PMCPMC8908645
OpenAlexW4220822666

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.