Evidence map›Paper›PMID 35263578›Full record

ArticleCell reports2022

CRISPR-Cas9 screen identifies oxidative phosphorylation as essential for cancer cell survival at low extracellular pH.

Johanna Michl, Yunyi Wang, Stefania Monterisi, Wiktoria Blaszczak, Ryan Beveridge, Esther M Bridges, Jana Koth, Walter F Bodmer, Pawel Swietach

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
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  6. Review
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  11. Iron and Cancer.Advances in experimental medicine and biology · 2025
    Review
  12. Article
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  15. Article
  16. Article
  17. Review
  18. Phenotypic screen of sixty-eight colorectal cancer cell lines identifies CEACAM6 and CEACAM5 as markers of acid resistance.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Article
  20. An engineered niche delineates metastatic potential of breast cancer.Bioengineering & translational medicine · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Johanna MichlDepartment of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK. Electronic address: johanna.michl@dpag.ox.ac.uk.
Yunyi WangDepartment of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK.
Stefania MonterisiDepartment of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK.
Wiktoria BlaszczakDepartment of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK.
Ryan BeveridgeVirus Screening Facility, MRC Weatherall Institute for Molecular Medicine, John Radcliffe Hospital, Oxford OX3 9DS, UK.
Esther M BridgesDepartment of NDM Experimental Medicine, MRC Human Immunology Unit, MRC Weatherall Institute of Molecular Medicine, JR Hospital, Headington, Oxford OX3 9DS, UK.
Jana KothMRC Weatherall Institute for Molecular Medicine, John Radcliffe Hospital, Headington, Oxford OX3 9DS, UK.
Walter F BodmerMRC Weatherall Institute for Molecular Medicine, John Radcliffe Hospital, Headington, Oxford OX3 9DS, UK.
Pawel SwietachDepartment of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK. Electronic address: pawel.swietach@dpag.ox.ac.uk.
John Radcliffe Hospital · GBOxford Fertility · GBUniversity of Oxford · GBMRC Weatherall Institute of Molecular Medicine · GB

Funding

Medical Research Council G0902418Wellcome Trust
6 · The paper itself

Abstract

Unlike most cell types, many cancer cells survive at low extracellular pH (pHe), a chemical signature of tumors. Genes that facilitate survival under acid stress are therefore potential targets for cancer therapies. We performed a genome-wide CRISPR-Cas9 cell viability screen at physiological and acidic conditions to systematically identify gene knockouts associated with pH-related fitness defects in colorectal cancer cells. Knockouts of genes involved in oxidative phosphorylation (NDUFS1) and iron-sulfur cluster biogenesis (IBA57, NFU1) grew well at physiological pHe, but underwent profound cell death under acidic conditions. We identified several small-molecule inhibitors of mitochondrial metabolism that can kill cancer cells at low pHe only. Xenografts established from NDUFS1

Indexed as

NeoplasmsOxidative PhosphorylationCell SurvivalCRISPR-Cas SystemsHumansHydrogen-Ion ConcentrationacidosisCRISPR-Cas9 screenoxidative phosphorylationtumor acidity

Identifiers

PMID35263578
PMCPMC8924371
OpenAlexW4220751331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.