Evidence map›Paper›PMID 35263147›Full record

ArticleScience translational medicine2022

Pulmonary microbiome and gene expression signatures differentiate lung function in pediatric hematopoietic cell transplant candidates.

Matt S Zinter, A Birgitta Versluys, Caroline A Lindemans, Madeline Y Mayday, Gustavo Reyes, Sara Sunshine, Marilynn Chan, Elizabeth K Fiorino, Maria Cancio, Sabine Prevaes and 6 more

Open access · greenAbstract read
In one paragraph

Article in Science translational medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Guideline
  2. Upper and Lower Respiratory Tract Compartmentalization in Pediatric Stem Cell Transplantation.American journal of respiratory cell and molecular biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. The Lung Microbiome.Journal of immunology (Baltimore, Md. : 1950) · 2024
    Review
  10. Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Matt S ZinterSchool of Medicine, Department of Pediatrics, Division of Critical Care Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-3351-3278
A Birgitta VersluysUniversity Medical Center Utrecht, Department of Pediatric Stem Cell Transplantation, Utrecht, 3584 CX, Netherlands.ORCID 0000-0002-4283-5503
Caroline A LindemansUniversity Medical Center Utrecht, Department of Pediatric Stem Cell Transplantation, Utrecht, 3584 CX, Netherlands.ORCID 0000-0002-3984-5620
Madeline Y MaydayDepartment of Pathology, Graduate Program in Experimental Pathology, and Yale Stem Cell Center, Yale University, New Haven, CT 06510, USA.ORCID 0000-0002-7209-0434
Gustavo ReyesSchool of Medicine, Department of Pediatrics, Division of Critical Care Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.
Sara SunshineSchool of Medicine, Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-1897-5063
Marilynn ChanSchool of Medicine, Department of Pediatrics, Division of Pulmonology, University of California, San Francisco, San Francisco, CA 94143, USA.
Elizabeth K FiorinoWC Medical College, Department of Pediatrics, Division of Pulmonology, Allergy and Immunology, Cornell University, New York City, NY 10065, USA.
Maria CancioWC Medical College, Department of Pediatrics, Cornell University, New York City, NY 10065, USA.ORCID 0000-0003-4430-6290
Sabine PrevaesDepartment of Pediatric Pulmonology, Wilhelmina Children's Hospital, University Medical Centre Utrecht, Utrecht University, Utrecht, 3584 CX, Netherlands.
Marina SirotaBakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-7246-6083
Michael A MatthaySchool of Medicine, Cardiovascular Research Institute, Departments of Medicine and Anesthesiology, University of California, San Francisco, San Francisco, CA 94143, USA.
Sandhya KharbandaSchool of Medicine, Department of Pediatrics, Division of Allergy, Immunology, and Bone Marrow Transplantation, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-6014-7659
Christopher C DvorakSchool of Medicine, Department of Pediatrics, Division of Allergy, Immunology, and Bone Marrow Transplantation, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-6146-3952
Jaap J BoelensWC Medical College, Department of Pediatrics, Cornell University, New York City, NY 10065, USA.
Joseph L DeRisiSchool of Medicine, Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-4611-9205
University of California, San Francisco · USMemorial Sloan Kettering Cancer Center · USUtrecht University · NLCornell University · USWilhelmina Children's Hospital · NLYale Cancer Center · US

Funding

Pediatric Scientist Development Program (PSDP) [K12]K12HD000850 · NICHD · YALE UNIVERSITY · PI Sallie R. Permar · 1987 to 2026
$44.1M
Precision Medicine in the Acute Respiratory Distress SyndromeR35HL140026 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CALFEE, CAROLYN · 2018 to 2024
$6.8M
Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
NOVEL PARACRINE MECHANISMS FOR CELL-BASED THERAPY OF INJURED LUNGSR01HL134828 · NHLBI · UNIVERSITY OF TEXAS HLTH CTR AT TYLER · PI JI, HONG-LONG · 2017 to 2025
$3.4M
Pathobiologic Transcriptional Signatures of Pulmonary Complications in Pediatric Hematopoietic Cellular TransplantationK23HL146936 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZINTER, MATTHEW SCOTT · 2020 to 2024
$980k
Identification and Characterization of the Antiviral Response to RSV Infection: A Single Cell ApproachF31AI150007 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SUNSHINE, SARA · 2020 to 2022
$116k
Howard Hughes Medical InstituteNHLBI NIH HHS K23 HL146936NHLBI NIH HHS L40 HL138866NHLBI NIH HHS R01 HL134828NHLBI NIH HHS R35 HL140026NIAID NIH HHS F31 AI150007NIAID NIH HHS T32 AI060537NICHD NIH HHS K12 HD000850
6 · The paper itself

Abstract

Impaired baseline lung function is associated with mortality after pediatric allogeneic hematopoietic cell transplantation (HCT), yet limited knowledge of the molecular pathways that characterize pretransplant lung function has hindered the development of lung-targeted interventions. In this study, we quantified the association between bronchoalveolar lavage (BAL) metatranscriptomes and paired pulmonary function tests performed a median of 1 to 2 weeks before allogeneic HCT in 104 children in The Netherlands. Abnormal pulmonary function was recorded in more than half the cohort, consisted most commonly of restriction and impaired diffusion, and was associated with both all-cause and lung injury-related mortality after HCT. Depletion of commensal supraglottic taxa, such as

Indexed as

Hematopoietic Stem Cell TransplantationMicrobiotaPulmonary FibrosisChildHumansLungTranscriptome

Identifiers

PMID35263147
PMCPMC9487170
OpenAlexW4220677411

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.