Evidence map›Paper›PMID 35263135›Full record

ArticleScience advances2022

Coordinated DNA and histone dynamics drive accurate histone H2A.Z exchange.

Matthew F Poyton, Xinyu A Feng, Anand Ranjan, Qin Lei, Feng Wang, Jasmin S Zarb, Robert K Louder, Giho Park, Myung Hyun Jo, Joseph Ye and 3 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Histone Variant H2A.Z Enhances Histone and Nucleosome Dynamics.Molecular & cellular proteomics : MCP · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Matthew F PoytonDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins School of Medicine, Baltimore, MD, USA.ORCID 0000-0003-1261-2138
Xinyu A FengDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0001-5862-1983
Anand RanjanDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0001-6071-6017
Qin LeiDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0002-9309-6552
Feng WangLaboratory of Biochemistry and Molecular Biology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Jasmin S ZarbDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-5318-7345
Robert K LouderDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0002-6944-9346
Giho ParkDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0002-0625-9772
Myung Hyun JoDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins School of Medicine, Baltimore, MD, USA.ORCID 0000-0003-2745-2843
Joseph YeDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0003-1735-7287
Sheng LiuDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0002-0424-0445
Taekjip HaDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins School of Medicine, Baltimore, MD, USA.ORCID 0000-0003-2195-6258
Carl WuDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0001-6933-5763
Johns Hopkins University · USHoward Hughes Medical Institute · USNational Cancer Institute · US

Funding

BIOCHEMISTRY, CELLULAR AND MOLECULAR BIOLOGY PROGRAMT32GM007445 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 1985 to 2021
$24.1M
Single Molecule Studies of Nucleic Acids RemodelingR35GM122569 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Taekjip Ha · 2017 to 2026
$3.5M
Mechanism of histone H2A.Z exchange catalyzed by SWR1 chromatin remodelerR01GM125831 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI WU, CARL · 2018 to 2021
$2.3M
High resolution chromatin structure of purified eukaryotic genesF32GM133151 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI LOUDER, ROBERT KENNETH · 2019 to 2021
$195k
Characterizing SWR1-mediated Histone Exchange at the Single Molecule LevelF32GM128299 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI POYTON, MATTHEW F. · 2018 to 2020
$192k
Occupational risk factors for NHL and NHL subtypes: an InterLymph-based analysisR03CA125831 · NCI · MASSEY UNIVERSITY · PI MANNETJE, ANDREA · 2007 to 2008
$110k
NCI NIH HHS R03 CA125831NIGMS NIH HHS F32 GM128299NIGMS NIH HHS F32 GM133151NIGMS NIH HHS R01 GM125831NIGMS NIH HHS R35 GM122569NIGMS NIH HHS T32 GM007445
6 · The paper itself

Abstract

Nucleosomal histone H2A is exchanged for its variant H2A.Z by the SWR1 chromatin remodeler, but the mechanism and timing of histone exchange remain unclear. Here, we quantify DNA and histone dynamics during histone exchange in real time using a three-color single-molecule FRET assay. We show that SWR1 operates with timed precision to unwrap DNA with large displacement from one face of the nucleosome, remove H2A-H2B from the same face, and rewrap DNA, all within 2.3 s. This productive DNA unwrapping requires full SWR1 activation and differs from unproductive, smaller-scale DNA unwrapping caused by SWR1 binding alone. On an asymmetrically positioned nucleosome, SWR1 intrinsically senses long-linker DNA to preferentially exchange H2A.Z on the distal face as observed in vivo. The displaced H2A-H2B dimer remains briefly associated with the SWR1-nucleosome complex and is dissociated by histone chaperones. These findings reveal how SWR1 coordinates DNA unwrapping with histone dynamics to rapidly and accurately place H2A.Z at physiological sites on chromatin.

Indexed as

HistonesSaccharomyces cerevisiae ProteinsChromatinDNANucleosomesChromatinDNAHistonesNucleosomesSaccharomyces cerevisiae Proteins

Identifiers

PMID35263135
PMCPMC8906749
OpenAlexW4220675192

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.