Evidence map›Paper›PMID 35261930›Full record

ArticleNon-coding RNA research2022

Adaptation of the protein translational apparatus during ATDC5 chondrogenic differentiation.

Mandy M F Steinbusch, Guus G H van den Akker, Andy Cremers, Adhiambo M A Witlox, Heleen M Staal, Mandy J Peffers, Lodewijk W van Rhijn, Marjolein M J Caron, Tim J M Welting

Open access · goldAbstract read
In one paragraph

Article in Non-coding RNA research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Mandy M F SteinbuschLaboratory for Experimental Orthopedics, Department of Orthopedic Surgery, Maastricht University, P.O. Box 5800, 6202 AZ, Maastricht, the Netherlands.
Guus G H van den AkkerLaboratory for Experimental Orthopedics, Department of Orthopedic Surgery, Maastricht University, P.O. Box 5800, 6202 AZ, Maastricht, the Netherlands.
Andy CremersLaboratory for Experimental Orthopedics, Department of Orthopedic Surgery, Maastricht University, P.O. Box 5800, 6202 AZ, Maastricht, the Netherlands.
Adhiambo M A WitloxLaboratory for Experimental Orthopedics, Department of Orthopedic Surgery, Maastricht University Medical Center, P.O. Box 5800, 6202 AZ, Maastricht, the Netherlands.
Heleen M StaalLaboratory for Experimental Orthopedics, Department of Orthopedic Surgery, Maastricht University Medical Center, P.O. Box 5800, 6202 AZ, Maastricht, the Netherlands.
Mandy J PeffersDepartment of Musculoskeletal Biology, Institute of Life Course and Medical Sciences, University of Liverpool, William Henry Duncan Building, 6 West Derby Street, L7 8TX, Liverpool, United Kingdom.
Lodewijk W van RhijnLaboratory for Experimental Orthopedics, Department of Orthopedic Surgery, Maastricht University Medical Center, P.O. Box 5800, 6202 AZ, Maastricht, the Netherlands.
Marjolein M J CaronLaboratory for Experimental Orthopedics, Department of Orthopedic Surgery, Maastricht University, P.O. Box 5800, 6202 AZ, Maastricht, the Netherlands.
Tim J M WeltingLaboratory for Experimental Orthopedics, Department of Orthopedic Surgery, Maastricht University, P.O. Box 5800, 6202 AZ, Maastricht, the Netherlands.
Maastricht University · NLUniversity Medical Center · USUniversity of Liverpool · GB

Funding

Medical Research Council MR/P020941/1Wellcome Trust
6 · The paper itself

Abstract

Introduction: Ribosome biogenesis is integrated with many cellular processes including proliferation, differentiation and oncogenic events. Chondrogenic proliferation and differentiation require a high cellular translational capacity to facilitate cartilaginous extracellular matrix production. We here investigated the expression dynamics of factors involved in ribosome biogenesis during Materials: SnoRNA expression during ATDC5 differentiation was analyzed by RNA sequencing of samples acquired from day 0 (progenitor stage), 7 (chondrogenic stage) and day 14 (hypertrophic stage). RT-qPCR was used to determine expression of fibrillarin, dyskerin, UBF-1, Sox9, Col2a1, Runx2, Col10a1 mRNAs and 18S, 5.8S and 28S rRNAs. Protein expression of fibrillarin, dyskerin and UBF-1 was determined by immunoblotting. Ribosomal RNA content per cell was determined by calculating rRNA RT-qPCR signals relative to DNA content (SYBR Green assay). Total protein translational activity was evaluated with a puromycilation assay and polysome profiling. Results: As a result of initiation of chondrogenic differentiation (Δt0-t7), 21 snoRNAs were differentially expressed (DE). Hypertrophic differentiation caused DE of 23 snoRNAs (Δt7-t14) and 43 when t0 was compared to t14. DE snoRNAs, amongst others, target nucleotide modifications in the 28S rRNA peptidyl transferase center and the 18S rRNA decoding center. UBF-1, fibrillarin and dyskerin expression increased as function of differentiation and displayed highest fold induction at day 5-6 in differentiation. Ribosomal RNA content per cell was significantly increased at day 7, but not at day 14 in differentiation. Similar dynamics in translational capacity and monosomal ribosome fraction were observed during differentiation. Conclusion: The expression of a great number of ribosome biogenesis factors is altered during chondrogenic differentiation of ATDC5 cells, which is accompanied by significant changes in cellular translational activity. This elucidation of ribosome biogenesis dynamics in chondrogenic differentiation models enables the further understanding of the role of ribosome biogenesis and activity during chondrocyte cell commitment and their roles in human skeletal development diseases.

Indexed as

ATDC5Chondrogenic differentiationRibosomesnoRNATranslation

Identifiers

PMID35261930
PMCPMC8881200
OpenAlexW4212976008

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.