Evidence map›Paper›PMID 35260975›Full record

ArticleFunctional & integrative genomics2022

Global gene expression profiling in congenital diaphragmatic hernia (CDH) patients.

Kubilay Gürünlüoğlu, Muhammed Dündar, Turgay Unver, Necmettin Akpınar, Ismail Kürşad Gokce, Semra Gürünlüoğlu, Mehmet Demircan, Ahmet Koc

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In one paragraph

Article in Functional & integrative genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kubilay GürünlüoğluDepartment of Pediatric Surgery, Faculty of Medicine, Inonu University, Malatya, Turkey.ORCID http://orcid.org/0000-0002-8315-1765
Muhammed DündarDepartment of Medical Genetics, Faculty of Medicine, Inonu University, Malatya, Turkey.ORCID http://orcid.org/0000-0001-6509-2012
Turgay UnverFicus Biotechnology Ostim OSB Mah, Inonu University, 100. Yıl Blv. No:55 Yenimahalle, Malatya, Turkey.ORCID http://orcid.org/0000-0001-6760-443X
Necmettin AkpınarDepartment of Pediatric Surgery, Faculty of Medicine, Inonu University, Malatya, Turkey.ORCID http://orcid.org/0000-0001-7212-684X
Ismail Kürşad GokceDepartment of Pediatrics and Division of Neonatology, Faculty of Medicine, Inonu University, Malatya, Turkey.ORCID http://orcid.org/0000-0001-8952-2865
Semra GürünlüoğluDepartment of Pathology, Malatya Education and Research Hospital, Malatya, Turkey.ORCID http://orcid.org/0000-0002-9737-859X
Mehmet DemircanDepartment of Pediatric Surgery, Faculty of Medicine, Inonu University, Malatya, Turkey.ORCID http://orcid.org/0000-0002-4022-1276
Ahmet KocDepartment of Medical Genetics, Faculty of Medicine, Inonu University, Malatya, Turkey. ahmet.koc@inonu.edu.tr.ORCID http://orcid.org/0000-0003-3484-2137
Inonu University · TRMalatya Devlet Hastanesi · TR

Funding

Inonu University TSA-2021-2454
6 · The paper itself

Abstract

Congenital diaphragmatic hernia (CDH) is an anomaly characterized by a defect in the diaphragm, leading to the passage of intra-abdominal organs into the thoracic cavity. Herein, the presented work analyzes the global gene expression profiles in nine CDH and one healthy newborn. All of the patients had left posterolateral (Bochdalek) diaphragmatic hernia, operated via an abdominal approach, and stomach and bowels in the thorax cavity. Some patients also had additional anomalies. A total of 560 differentially regulated genes were measured. Among them, 11 genes showed significant changes in expression associated with lung tissue, vascular structure development, and vitamin A metabolism, which are typical ontologies related to CDH etiology. Among them, SLC25A24 and RAB3IL1 are involved in angiogenesis, HIF1A and FOXC2-AS1 are related with the alveolus, MAGI2-AS3 is associated with the diaphragm, LHX4 and DHH are linked with the lung, and BRINP1, FZD9, WNT4, and BLOC1S1-RDH5 are involved in retinol. Besides, the expression levels of some previously claimed genes with CDH etiology also showed diverse expression patterns in different patients. All these indicated that CDH is a complex, multigenic anomaly, requiring holistic approaches for its elucidation.

Indexed as

Hernias, Diaphragmatic, CongenitalDiaphragmGene Expression ProfilingHumansInfant, NewbornMicroarray AnalysisNerve Tissue ProteinsBLOC1S1 protein, humanNerve Tissue ProteinsCongenital diaphragmatic herniaGlobal transcriptomeMultigenicVitamin A

Identifiers

PMID35260975
OpenAlexW4220917215

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.