Evidence map›Paper›PMID 35260602›Full record

ArticleScientific reports2022

A SNP of betaine aldehyde dehydrogenase (BADH) enhances an aroma (2-acetyl-1-pyrroline) in sponge gourd (Luffa cylindrica) and ridge gourd (Luffa acutangula).

Chatree Saensuk, Saowalak Ruangnam, Mutiara K Pitaloka, Reajina Dumhai, Sugunya Mahatheeranont, Simon Jan de Hoop, Conrado Balatero, Kanamon Riangwong, Vinitchan Ruanjaichon, Theerayut Toojinda and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  4. Identification ofPlants (Basel, Switzerland) · 2024
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  6. A non-synonymous SNP in homolog ofGenetic resources and crop evolution · 2023
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  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Chatree SaensukInterdisciplinary Graduate Program in Genetic Engineering, Kasetsart University, Bangkok, 10900, Thailand.
Saowalak RuangnamHortigenetics Research (S.E. Asia) Limited, Suphan Buri, 72190, Thailand.
Mutiara K PitalokaRice Science Center, Kasetsart University Kamphaeng Saen Campus, Nakhon Pathom, 73140, Thailand.
Reajina DumhaiRice Science Center, Kasetsart University Kamphaeng Saen Campus, Nakhon Pathom, 73140, Thailand.
Sugunya MahatheeranontDepartment of Chemistry, Faculty of Science, Chiang Mai University, Chiang Mai, 50200, Thailand.
Simon Jan de HoopHortigenetics Research (S.E. Asia) Limited, Suphan Buri, 72190, Thailand.
Conrado BalateroHortigenetics Research (S.E. Asia) Limited, Suphan Buri, 72190, Thailand.
Kanamon RiangwongDepartment of Biotechnology, Faculty of Engineering and Industrial Technology, Silpakorn University, Sanamchandra Palace Campus, Nakhon Pathom, 73000, Thailand.
Vinitchan RuanjaichonNational Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Khlong Luang, 12120, Pathum Thani, Thailand.
Theerayut ToojindaNational Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Khlong Luang, 12120, Pathum Thani, Thailand.
Apichart VanavichitRice Science Center, Kasetsart University Kamphaeng Saen Campus, Nakhon Pathom, 73140, Thailand.
Samart WanchanaNational Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Khlong Luang, 12120, Pathum Thani, Thailand. samart.wan@biotec.or.th.
Siwaret ArikitRice Science Center, Kasetsart University Kamphaeng Saen Campus, Nakhon Pathom, 73140, Thailand. siwaret.a@ku.th.
Kasetsart University · THNational Center for Genetic Engineering and Biotechnology · THChiang Mai University · THNational Science and Technology Development Agency · THSilpakorn University · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Luffa is a genus of tropical and subtropical vines belonging to the Cucurbitaceae family. Sponge gourd (Luffa cylindrica) and ridge gourd (Luffa acutangula) are two important species of the genus Luffa and are good sources of human nutrition and herbal medicines. As a vegetable, aromatic luffa is more preferred by consumers than nonaromatic luffa. While the aroma trait is present in the sponge gourd, the trait is not present in the ridge gourd. In this study, we identified Luffa cylindrica's betaine aldehyde dehydrogenase (LcBADH) as a gene associated with aroma in the sponge gourd based on a de novo assembly of public transcriptome data. A single nucleotide polymorphism (SNP: A > G) was identified in exon 5 of LcBADH, causing an amino acid change from tyrosine to cysteine at position 163, which is important for the formation of the substrate binding pocket of the BADH enzyme. Based on the identified SNP, a TaqMan marker, named AroLuff, was developed and validated in 370 F

Indexed as

LuffaBetaine-Aldehyde DehydrogenaseOdorantsPolymorphism, Single NucleotidePyrrolesVegetables2-acetyl-1-pyrrolineBetaine-Aldehyde DehydrogenasePyrroles

Identifiers

PMID35260602
PMCPMC8904516
OpenAlexW4220995988

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.