Evidence map›Paper›PMID 35259089›Full record

ArticleeLife2022

Quantitative transportomics identifies Kif5a as a major regulator of neurodegeneration.

Sahil H Shah, Lucio M Schiapparelli, Yuanhui Ma, Satoshi Yokota, Melissa Atkins, Xin Xia, Evan G Cameron, Thanh Huang, Sarah Saturday, Catalina B Sun and 5 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Astrocytes in the mouse brain respond bilaterally to unilateral retinal neurodegeneration.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Mechanism and regulation of kinesin motors.Nature reviews. Molecular cell biology · 2025
    Review
  13. Article
  14. The role of RGC degeneration in the pathogenesis of glaucoma.International journal of biological sciences · 2025
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Sahil H Shah *Byers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, United States.ORCID 0000-0002-6601-219X
Lucio M Schiapparelli *Scripps Research, Neuroscience Department and the Dorris Neuroscience Center, La Jolla, United States.
Yuanhui MaScripps Research, Department of Molecular Medicine, La Jolla, United States.
Satoshi YokotaByers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, United States.ORCID 0000-0002-3727-7279
Melissa AtkinsByers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, United States.
Xin XiaByers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, United States.
Evan G CameronByers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, United States.
Thanh HuangDepartment of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, United States.
Sarah SaturdayScripps Research, Neuroscience Department and the Dorris Neuroscience Center, La Jolla, United States.
Catalina B SunByers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, United States.
Cara KnaselByers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, United States.
Seth BlackshawDepartment of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID 0000-0002-1338-8476
John R YatesScripps Research, Department of Molecular Medicine, La Jolla, United States.ORCID 0000-0001-5267-1672
Hollis T ClineScripps Research, Neuroscience Department and the Dorris Neuroscience Center, La Jolla, United States.ORCID 0000-0002-4887-9603
Jeffrey L GoldbergByers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, United States.ORCID 0000-0002-1390-7360
Vision Eye Institute · AUJohns Hopkins University · USScripps Institution of Oceanography · USUniversity of California San Diego · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
Activity-dependent Development of Visual System DevelopmentR01EY011261 · NEI · SCRIPPS RESEARCH INSTITUTE, THE · PI CLINE, HOLLIS T. · 1996 to 2018
$11.1M
Stanford Vision Research CoreP30EY026877 · NEI · STANFORD UNIVERSITY · PI TIRIN MOORE · 2017 to 2026
$8.0M
Core Grant for Vision ResearchP30EY019005 · NEI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI ALBRIGHT, THOMAS D · 2009 to 2018
$7.7M
Quantitative Proteome Analysis of Brain DevelopmentR01MH067880 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI YATES III, JOHN R · 2003 to 2017
$7.1M
Molecular Discovery for Optic Nerve RegenerationU01EY027261 · NEI · STANFORD UNIVERSITY · PI GOLDBERG, JEFFREY L, HUBERMAN, ANDREW D · 2016 to 2019
$3.0M
Development of midbrain circuitryR01EY027437 · NEI · SCRIPPS RESEARCH INSTITUTE, THE · PI CLINE, HOLLIS T. · 2018 to 2020
$1.9M
Exosome-mediated cell-cell signaling in Rett SyndromeR01MH103134 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI CLINE, HOLLIS T., MUOTRI, ALYSSON R. · 2013 to 2016
$1.4M
NEI NIH HHS P30 EY019005NEI NIH HHS P30 EY026877NEI NIH HHS R01 EY011261NEI NIH HHS R01 EY027437NEI NIH HHS U01 EY027261NIGMS NIH HHS P41 GM103533NIMH NIH HHS R01 MH067880NIMH NIH HHS R01 MH103134
6 · The paper itself

Abstract

Many neurons in the adult central nervous system, including retinal ganglion cells (RGCs), degenerate and die after injury. Early axon protein and organelle trafficking failure is a key component in many neurodegenerative disorders yet changes to axoplasmic transport in disease models have not been quantified. We analyzed early changes in the protein 'transportome' from RGC somas to their axons after optic nerve injury and identified transport failure of an anterograde motor protein Kif5a early in RGC degeneration. We demonstrated that manipulating Kif5a expression affects anterograde mitochondrial trafficking in RGCs and characterized axon transport in Kif5a knockout mice to identify proteins whose axon localization was Kif5a-dependent. Finally, we found that knockout of Kif5a in RGCs resulted in progressive RGC degeneration in the absence of injury. Together with expression data localizing Kif5a to human RGCs, these data identify Kif5a transport failure as a cause of RGC neurodegeneration and point to a mechanism for future therapeutics.

Indexed as

Optic Nerve InjuriesAnimalsAxonal TransportAxonsKinesinsMiceMice, Inbred C57BLNerve RegenerationRetinal Ganglion CellsKif5A protein, mouseKinesinsdegenerationmouseneuroscienceoptic nerveproteomicsratregenerationregenerative medicineretinal ganglion cellstem cells

Identifiers

PMID35259089
PMCPMC8947766
OpenAlexW4220953126

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.