Evidence map›Paper›PMID 35258836›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Characterization of Programmable Transcription Activators in the Model Monocot Setaria viridis Via Protoplast Transfection.

Adam Sychla, Juan Armando Casas-Mollano, Matthew H Zinselmeier, Michael Smanski

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Adam SychlaDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Saint Paul, MN, USA.
Juan Armando Casas-MollanoDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Saint Paul, MN, USA.
Matthew H ZinselmeierDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Saint Paul, MN, USA.
Michael SmanskiDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Saint Paul, MN, USA. smanski@umn.edu.
University of Minnesota · USBiotechnology Institute · USDepartment of Plant Biology · US

Funding

TRAINING FOR FUTURE BIOTECHNOLOGY DEVELOPMENTT32GM008347 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SCHMIDT-DANNERT, CLAUDIA · 1990 to 2021
$11.0M
NIGMS NIH HHS T32 GM008347
6 · The paper itself

Abstract

Recent advances in DNA synthesis and assembly allow for genetic constructs to be designed and constructed in high throughput. Characterizing large numbers of variant genetic designs is not feasible with low-throughput and time-consuming plant transformation workflows. Protoplast transformation offers a rapid, high-throughput compatible alternative for testing genetic constructs in plant-relevant molecular environments. Here, we describe a protocol for protoplast transformation using a recent experiment in genetic optimization of dCas9-based programmable transcription activators as an example.

Indexed as

ProtoplastsSetaria PlantPlantsTransfectiondCas9High throughputMonocotProtoplastsSetaria viridisTranscriptionTransfection

Identifiers

PMID35258836
OpenAlexW4225925394

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.