Evidence map›Paper›PMID 35257572›Full record

ArticleJournal of chemical theory and computation2022

Molecular Dynamics Simulations Enforcing Nonperiodic Boundary Conditions: New Developments and Application to the Solvent Shifts of Nitroxide Magnetic Parameters.

Giordano Mancini, Marco Fusè, Filippo Lipparini, Michele Nottoli, Giovanni Scalmani, Vincenzo Barone

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Giordano ManciniScuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy.ORCID https://orcid.org/0000-0002-1327-7303
Marco FusèScuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy.ORCID https://orcid.org/0000-0003-0130-5175
Filippo LippariniDipartimento di Chimica e Chimica Industriale, Universitaá di Pisa, Via G. Moruzzi 13, 56124 Pisa, Italy.ORCID https://orcid.org/0000-0002-4947-3912
Michele NottoliDipartimento di Chimica e Chimica Industriale, Universitaá di Pisa, Via G. Moruzzi 13, 56124 Pisa, Italy.
Giovanni ScalmaniGaussian, Inc., 340 Quinnipiac Street, Building 40, Wallingford, Connecticut 06492, United States.ORCID https://orcid.org/0000-0002-4597-7195
Vincenzo BaroneScuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy.ORCID https://orcid.org/0000-0001-6420-4107

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multiscale methods combining quantum mechanics and molecular mechanics (QM/MM) have become the most suitable and effective strategies for the investigation of the spectroscopic properties of medium-to-large size chromophores in condensed phases. In this context, we are developing a novel workflow aimed at improving the generality, reliability, and ease of use of the available computational tools. In this paper, we report our latest developments with specific reference to a general protocol based on atomistic simulations, carried out under nonperiodic boundary conditions (NPBC). In particular, we add to our in house MD engine a new efficient treatment of mean field electrostatic contributions to energy and forces, together with the capability of performing the simulations either in the canonical (

Indexed as

Molecular Dynamics SimulationQuantum TheoryNitrogen OxidesReproducibility of ResultsSolventsStatic ElectricityNitrogen OxidesnitroxylSolvents

Identifiers

PMID35257572
PMCPMC9009096

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.