Evidence map›Paper›PMID 35257395›Full record

ArticleMedical physics2022

INSIDEnet: Interpretable NonexpanSIve Data-Efficient network for denoising in grating interferometry breast CT.

Stefano van Gogh, Zhentian Wang, Michał Rawlik, Christian Etmann, Subhadip Mukherjee, Carola-Bibiane Schönlieb, Florian Angst, Andreas Boss, Marco Stampanoni

Open access · hybridAbstract read
In one paragraph

Article in Medical physics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Stefano van GoghPhoton Science Division, X-Ray Tomography Group, Paul Scherrer Institute, Villigen PSI, Switzerland.
Zhentian WangDepartment of Engineering Physics, Tsinghua University, Haidian District, Beijing, China.
Michał RawlikPhoton Science Division, X-Ray Tomography Group, Paul Scherrer Institute, Villigen PSI, Switzerland.
Christian EtmannCambridge Image Analysis Group, Centre for Mathematical Sciences, University of Cambridge, Cambridge, United Kingdom.
Subhadip MukherjeeCambridge Image Analysis Group, Centre for Mathematical Sciences, University of Cambridge, Cambridge, United Kingdom.
Carola-Bibiane SchönliebCambridge Image Analysis Group, Centre for Mathematical Sciences, University of Cambridge, Cambridge, United Kingdom.
Florian AngstInstitute for Diagnostic and Interventional Radiology, University Hospital Zürich, Zürich, Switzerland.
Andreas BossInstitute for Diagnostic and Interventional Radiology, University Hospital Zürich, Zürich, Switzerland.
Marco StampanoniPhoton Science Division, X-Ray Tomography Group, Paul Scherrer Institute, Villigen PSI, Switzerland.
University of Cambridge · GBETH Zurich · CHUniversity Hospital of Zurich · CHPaul Scherrer Institute · CHTsinghua University · CN

Funding

ETH-Research Commission ETH-12 20-2Promedica StiftungSNF CRSII5 183568Swisslos Lottery Fund of Kanton Aargau
6 · The paper itself

Abstract

purposeBreast cancer is the most common malignancy in women. Unfortunately, current breast imaging techniques all suffer from certain limitations: they are either not fully three dimensional, have an insufficient resolution or low soft-tissue contrast. Grating interferometry breast computed tomography (GI-BCT) is a promising X-ray phase contrast modality that could overcome these limitations by offering high soft-tissue contrast and excellent three-dimensional resolution. To enable the transition of this technology to clinical practice, dedicated data-processing algorithms must be developed in order to effectively retrieve the signals of interest from the measured raw data.

methodsThis article proposes a novel denoising algorithm that can cope with the high-noise amplitudes and heteroscedasticity which arise in GI-BCT when operated in a low-dose regime to effectively regularize the ill-conditioned GI-BCT inverse problem. We present a data-driven algorithm called INSIDEnet, which combines different ideas such as multiscale image processing, transform-domain filtering, transform learning, and explicit orthogonality to build an Interpretable NonexpanSIve Data-Efficient network (INSIDEnet).

resultsWe apply the method to simulated breast phantom datasets and to real data acquired on a GI-BCT prototype and show that the proposed algorithm outperforms traditional state-of-the-art filters and is competitive with deep neural networks. The strong inductive bias given by the proposed model's architecture allows to reliably train the algorithm with very limited data while providing high model interpretability, thus offering a great advantage over classical convolutional neural networks (CNNs).

conclusionsThe proposed INSIDEnet is highly data-efficient, interpretable, and outperforms state-of-the-art CNNs when trained on very limited training data. We expect the proposed method to become an important tool as part of a dedicated plug-and-play GI-BCT reconstruction framework, needed to translate this promising technology to the clinics.

Indexed as

Image Processing, Computer-AssistedTomography, X-Ray ComputedAlgorithmsFemaleHumansInterferometryPhantoms, ImagingSignal-To-Noise RatioThoraxbreast CTimage denoisinginterpretable machine learning

Identifiers

PMID35257395
PMCPMC9311686
OpenAlexW4221090525

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.