Evidence map›Paper›PMID 35255160›Full record

ArticleHelicobacter2022

Establishment of a reference panel of Helicobacter pylori strains for antimicrobial susceptibility testing.

Kenji Yokota, Takako Osaki, Shunji Hayashi, Shin-Ichi Yokota, Hiroaki Takeuchi, Emiko Rimbara, Hinako Ojima, Toyotaka Sato, Hideo Yonezawa, Keigo Shibayama and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Helicobacter, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Advances in Diagnostic Modalities forLife (Basel, Switzerland) · 2024
    Review
  5. Article
  6. Journal of clinical medicine · 2022
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 1 country.

Kenji YokotaWorking Group of the Reference Panel of Helicobacter pylori Strains for Antimicrobial Susceptibility Tests in Japanese Society for Helicobacter Research, Tokyo, Japan.ORCID https://orcid.org/0000-0003-2643-3448
Takako OsakiWorking Group of the Reference Panel of Helicobacter pylori Strains for Antimicrobial Susceptibility Tests in Japanese Society for Helicobacter Research, Tokyo, Japan.ORCID https://orcid.org/0000-0002-6430-4666
Shunji HayashiWorking Group of the Reference Panel of Helicobacter pylori Strains for Antimicrobial Susceptibility Tests in Japanese Society for Helicobacter Research, Tokyo, Japan.
Shin-Ichi YokotaWorking Group of the Reference Panel of Helicobacter pylori Strains for Antimicrobial Susceptibility Tests in Japanese Society for Helicobacter Research, Tokyo, Japan.ORCID https://orcid.org/0000-0002-0831-3429
Hiroaki TakeuchiWorking Group of the Reference Panel of Helicobacter pylori Strains for Antimicrobial Susceptibility Tests in Japanese Society for Helicobacter Research, Tokyo, Japan.
Emiko RimbaraDepartment of Bacteriology II, National Institute of Infectious Diseases (NIID), Musashimurayama, Japan.ORCID https://orcid.org/0000-0001-8847-1840
Hinako OjimaGraduate School of Health Science, Okayama University, Okayama, Japan.
Toyotaka SatoDepartment of Microbiology, Sapporo Medical University School of Medicine, Sapporo, Japan.
Hideo YonezawaDepartment of Infectious Diseases, Kyorin University School of Medicine, Mitaka, Japan.ORCID https://orcid.org/0000-0002-7989-9711
Keigo ShibayamaDepartment of Bacteriology, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Kengo TokunagaDepartment of General Medicine, Kyorin University School of Medicine, Mitaka, Japan.
Shigeru KamiyaDepartment of Infectious Diseases, Kyorin University School of Medicine, Mitaka, Japan.ORCID https://orcid.org/0000-0002-5095-7121
Kazunari MurakamiDepartment of Gastroenterology, Faculty of Medicine, Oita University, Oita, Japan.ORCID https://orcid.org/0000-0003-2668-5039
Mototsugu KatoDepartment of Gastroenterology, National Hospital Organization National Hakodate Hospital, Hakodate, Japan.
Toshiro SugiyamaResearch Division of Molecular Target Therapeutics and Prevention of GI Cancer, Hokkaido University Hospital, Sapporo, Japan.
Kyorin University · JPOkayama University of Science · JPSapporo Medical University · JPThe Japanese Society of Gastroenterological Surgery · JPHokkaido University Hospital · JPNagoya University · JPNational Hospital Organization · JPNational Institute of Infectious Diseases · JPOita University · JP

Funding

Health Labor Sciences Research 19HA1007Health Labor Sciences Research 21HA1005the Japanese Society for Helicobacter Research
6 · The paper itself

Abstract

backgroundEradication treatment for Helicobacter pylori gastritis is covered by national health insurance since 2013 in Japan. However, eradication failure due to the increase of antimicrobial resistance has become a serious problem. The present study aims to establish a reference panel of Japanese H. pylori strains for antimicrobial susceptibility testing.

methodA total of 28 strains were collected from 4 medical facilities in Japan. Antimicrobial susceptibility tests (ASTs) to clarithromycin (CLR), amoxicillin (AMX), and metronidazole (MNZ), were used to select standard reference strains. Complete genome sequences were also determined.

resultsThree H. pylori strains (JSHR3, JSHR6 and JSHR31) were selected as standard reference strains by the Japanese Society for Helicobacter Research (JSHR). The minimum inhibitory concentrations (MICs) of the antibiotics against these 3 strains by agar dilution method with Brucella-based horse-serum-containing agar medium were as follows: JSHR3 (CLR 16 μg/ml, AMX 0.032 μg/ml and MNZ 4 μg/ml), JSHR6 (CLR 0.016 μg/ml, AMX 0.032 μg/ml and MNZ 4 μg/ml), and JSHR31 (CLR 16 μg/ml, AMX 1 μg/ml and MNZ 64 μg/ml).

conclusionsA reference panel of H. pylori JSHR strains was established. The panel consisted of JSHR6, which was antibiotic-susceptible, JSHR3, which was CLR-resistant, and JSHR31, which was multi-resistant. This reference panel will be essential for standardized ASTs before the optimal drugs are selected for eradication treatment.

Indexed as

Helicobacter InfectionsHelicobacter pyloriAgarAmoxicillinAnti-Bacterial AgentsClarithromycinDrug Resistance, BacterialHumansMetronidazoleMicrobial Sensitivity TestsAgarAmoxicillinAnti-Bacterial AgentsClarithromycinMetronidazoleantibiotic resistanceantimicrobial susceptibility testsgenome informationHelicobacter pylorireference panel

Identifiers

PMID35255160
PMCPMC9286379
OpenAlexW4221136697

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.