Evidence map›Paper›PMID 35254829›Full record

ArticleJournal of the American Chemical Society2022

Probing the Mechanism of Isonitrile Formation by a Non-Heme Iron(II)-Dependent Oxidase/Decarboxylase.

Antonio Del Rio Flores, David W Kastner, Yongle Du, Maanasa Narayanamoorthy, Yuanbo Shen, Wenlong Cai, Vyshnavi Vennelakanti, Nicholas A Zill, Luisa B Dell, Rui Zhai and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  8. Copper-chelating natural products.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2025
    Review
  9. Article
  10. Biosynthesis of isonitrile lipopeptides.Current opinion in chemical biology · 2024
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Antonio Del Rio FloresDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States.ORCID 0000-0001-5893-3557
David W KastnerDepartment of Bioengineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.ORCID 0000-0002-7766-4249
Yongle DuDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States.ORCID 0000-0002-5727-3355
Maanasa NarayanamoorthyDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.ORCID 0000-0002-7418-2607
Yuanbo ShenDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Wenlong CaiDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States.
Vyshnavi VennelakantiDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.ORCID 0000-0001-7677-2902
Nicholas A ZillDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States.
Luisa B DellDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States.
Rui ZhaiDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States.ORCID 0000-0001-5032-9689
Heather J KulikDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.ORCID 0000-0001-9342-0191
Wenjun ZhangDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States.ORCID 0000-0001-9348-972X
University of California, Berkeley · USMassachusetts Institute of Technology · USChan Zuckerberg Initiative (United States) · US

Funding

In Situ Natural Product Labeling and ApplicationsDP2AT009148 · NCCIH · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZHANG, WENJUN · 2015 to 2020
$2.8M
Biosynthesis of unusual bio-orthogonal functionalities in natural productsR01GM136758 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZHANG, WENJUN · 2020 to 2023
$1.5M
NCCIH NIH HHS DP2 AT009148NIGMS NIH HHS R01 GM136758Wellcome Trust
6 · The paper itself

Abstract

The isonitrile moiety is an electron-rich functionality that decorates various bioactive natural products isolated from diverse kingdoms of life. Isonitrile biosynthesis was restricted for over a decade to isonitrile synthases, a family of enzymes catalyzing a condensation reaction between l-Trp/l-Tyr and ribulose-5-phosphate. The discovery of ScoE, a non-heme iron(II) and α-ketoglutarate-dependent dioxygenase, demonstrated an alternative pathway employed by nature for isonitrile installation. Biochemical, crystallographic, and computational investigations of ScoE have previously been reported, yet the isonitrile formation mechanism remains obscure. In the present work, we employed in vitro biochemistry, chemical synthesis, spectroscopy techniques, and computational simulations that enabled us to propose a plausible molecular mechanism for isonitrile formation. Our findings demonstrate that the ScoE reaction initiates with C5 hydroxylation of (

Indexed as

Carboxy-LyasesOxidoreductasesFerrous CompoundsIronKetoglutaric AcidsCarboxy-LyasesFerrous CompoundsIronKetoglutaric AcidsOxidoreductases

Identifiers

PMID35254829
PMCPMC8986608
OpenAlexW4220832412

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.